PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00293.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 904aa MW: 96285.9 Da PI: 12.0168

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00293.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.5	4.3e-20	715	766	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++y+GVr ++ +gr++AeIrdp k+ r++lg+++taeeAa+a++aa+++++g+ Zmw_sc00293.1.g00090.1.am.mk 715 PHYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTYDTAEEAARAYDAAAREYRGA 766 68******.******83...36************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.7E-14	715	765	IPR001471	AP2/ERF domain
CDD	cd00018	1.15E-14	715	773	No hit	No description
SuperFamily	SSF54171	5.1E-22	716	774	IPR016177	DNA-binding domain
SMART	SM00380	2.4E-37	716	779	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.7E-31	716	773	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.302	716	773	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.8E-10	717	728	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.8E-10	739	755	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 904 aa Download sequence Send to blast
MTHHDPSLLL PPLPRRIPTP HAAAVTVAIH QQHHATTRQV NTGVPSAARP HALTPRRSRS 60 RTIPRSFLSS RCPAEPTRTA GPNESGQYTD RPGRNHARGG RHTRSAESGS EFCKTASSAR 120 PKRPPLVAAA AAPGIQKLRR SRKNRASRTA PAHHTTTILP RPENSDKIWR GGTYTTPPPA 180 AVAVAPSQVR GLSLSTFPRC ARIIPRPDES RDPAAIRPAG RAPRWRACVH GARPALPASP 240 GGAVSGAAWC VDGGAQSAGL DTALPNPLPP HERSSVSYRR VPDSMLSSAT EVHAPLAITN 300 GQAGGARPCQ VPRRSAWDAR RRARHPVTQD AKERQRRERA VEWRCVGTAR MRRHSHPPRP 360 QAEYVRTPVA TGAWRCPRAL SVQSPPRMRG RPRGAGTVVG GGYAIRSGRS ERARSRRMPT 420 LGRPHRLERT GRLVTCRRQL QPPPTLRGDY GPSGGRAGGF IGLRSCVCVS VVHWTSRTHL 480 LARADDAVGD TIRVTATRGA GRTEGGDGRR MPVILLRAHA SGDGRRLVGL GSVGCPHCGE 540 TAARDARIVM PPRSSRRAHD ARDVLPQRAA RRAPRVSFPI ETAPDAAQFA ARQGVEWEKA 600 PRGTVKCRHA KHEARRRGGD SQSARSLTAP SFIPCGRSTT RAALTASPPF LTRPSSSPRY 660 KSSPGLPPNP RHLPSTRERN NTATMAPRTS EKTTQPATAA TGLALGVGCG GAGGPHYRGV 720 RKRPWGRFAA EIRDPAKKSR VWLGTYDTAE EAARAYDAAA REYRGAKAKT NFPFLSSSSP 780 APVAVTGGGT GSGSSNSSTV ESFGCDVQAP PMQAMPLPPS LELDLFSRGA GAVRFPFTGY 840 PAAAAAGCHV LKLAPTVTVA AVAQSDSDSS SVVDLAPSPP AVSAQKTVAF DLDLNCPPPT 900 EAEA

Sequence ? help Back to Top

Protein Sequence Length: 904 aa Download sequence Send to blast

MTHHDPSLLL PPLPRRIPTP HAAAVTVAIH QQHHATTRQV NTGVPSAARP HALTPRRSRS  60
RTIPRSFLSS RCPAEPTRTA GPNESGQYTD RPGRNHARGG RHTRSAESGS EFCKTASSAR  120
PKRPPLVAAA AAPGIQKLRR SRKNRASRTA PAHHTTTILP RPENSDKIWR GGTYTTPPPA  180
AVAVAPSQVR GLSLSTFPRC ARIIPRPDES RDPAAIRPAG RAPRWRACVH GARPALPASP  240
GGAVSGAAWC VDGGAQSAGL DTALPNPLPP HERSSVSYRR VPDSMLSSAT EVHAPLAITN  300
GQAGGARPCQ VPRRSAWDAR RRARHPVTQD AKERQRRERA VEWRCVGTAR MRRHSHPPRP  360
QAEYVRTPVA TGAWRCPRAL SVQSPPRMRG RPRGAGTVVG GGYAIRSGRS ERARSRRMPT  420
LGRPHRLERT GRLVTCRRQL QPPPTLRGDY GPSGGRAGGF IGLRSCVCVS VVHWTSRTHL  480
LARADDAVGD TIRVTATRGA GRTEGGDGRR MPVILLRAHA SGDGRRLVGL GSVGCPHCGE  540
TAARDARIVM PPRSSRRAHD ARDVLPQRAA RRAPRVSFPI ETAPDAAQFA ARQGVEWEKA  600
PRGTVKCRHA KHEARRRGGD SQSARSLTAP SFIPCGRSTT RAALTASPPF LTRPSSSPRY  660
KSSPGLPPNP RHLPSTRERN NTATMAPRTS EKTTQPATAA TGLALGVGCG GAGGPHYRGV  720
RKRPWGRFAA EIRDPAKKSR VWLGTYDTAE EAARAYDAAA REYRGAKAKT NFPFLSSSSP  780
APVAVTGGGT GSGSSNSSTV ESFGCDVQAP PMQAMPLPPS LELDLFSRGA GAVRFPFTGY  840
PAAAAAGCHV LKLAPTVTVA AVAQSDSDSS SVVDLAPSPP AVSAQKTVAF DLDLNCPPPT  900
EAEA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	3e-21	712	778	1	68	ATERF1
3gcc_A	3e-21	712	778	1	68	ATERF1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	338	RQRRER

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3846	31	74