PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00251.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 569aa    MW: 60273 Da    PI: 10.484
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00251.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA90.52.2e-28398454158
                     CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                                   d+p+ VN+KQy++Il+RR +Rak+e+e++l  k+rk ylheSRh hA+rR+RgsgGrF
  Zmw_sc00251.1.g00020.1.am.mk 398 DAPICVNPKQYEGILRRRRARAKAERENRL-VKGRKSYLHESRHLHAMRRARGSGGRF 454
                                   689***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-32396457IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.029397457IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.2E-20400422IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-25400454IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.2E-20431454IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MAGVRVAAAA APTTTRQALP RVQGSPFLST RGLAFSWSGL MRARYRHFLA PDLAFPVHAR  60
CRLMPFTSVS TPPTPGYGTL PSYGVPDFIP SPTGYGAPGL AESSASGAPA THALGSVDAD  120
LVSPGSGALS GDFPAPSSDH DVTTSPGLGS PAAAPTTASA ALAAPAPPRR ARQWPVVSRA  180
VLGPVLTMSC RPTRHDKARR ATGPRHETVR STTGPCRPRD VTGPLSASPH LLALMRCPSS  240
LALLARLEIP FKARRGKATM MSFKNHQGFA ALNQASHGSG APLPWWAGPQ LLYGEPAPLS  300
PEETRREGQF EVVPGAQSSP DPAPPSAKRA AAPEVLKFSV FQSQGDPEAG GKGDKAPDHS  360
TIIALQSPFP EYNGRFEIGM GQSMSGGQML LPLNVPADAP ICVNPKQYEG ILRRRRARAK  420
AERENRLVKG RKSYLHESRH LHAMRRARGS GGRFLNTKKA GQGKETSAKE GNKAAPNARP  480
GSFSPRLEQG NNQHNCPSRS SVSSGLSGSE ASSVYEHDDT DHYNSSIEHL RTPFFTPQPS  540
IMDGEHGAAT IPSFKWATGY GCCEQLLRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-15398486278NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008677584.11e-109nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_020407730.11e-109nuclear transcription factor Y subunit A-10 isoform X2
RefseqXP_025796559.11e-109nuclear transcription factor Y subunit A-10-like
RefseqXP_025796560.11e-109nuclear transcription factor Y subunit A-10-like
RefseqXP_025796561.11e-109nuclear transcription factor Y subunit A-10-like
TrEMBLA0A0A9RWX31e-122A0A0A9RWX3_ARUDO; Uncharacterized protein
STRINGPavir.Ia01146.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23073790