PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00248.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 371aa MW: 39456.1 Da PI: 5.7096

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00248.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.6	6.1e-15	187	232	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++N++f eL +++P++ +K++Ka+iL A++Y+k+Lq Zmw_sc00248.1.g00140.1.am.mk 187 HIIAERKRREKMNQRFIELSTVIPNL-----RKMDKATILSAATRYVKDLQ 232 899********************9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.631	182	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-12	187	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-18	187	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.78E-16	187	236	No hit	No description
SuperFamily	SSF47459	2.62E-17	187	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.0E-15	188	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence Send to blast
MEDSSLFMQW AMTTLHHEHQ QAVAVDDDCG EATTFPSLLA LREASQAAEM IQELIAVDAE 60 DHPANSWSSS DGDATDGSSA DNNNNLAPAA VHHDICPVSS PSNPVARRVV DPSRNVAGSG 120 TSPPVTWNFS AAAAAAQTSG DYGDGMLTET AAATRGPRPD LAYGSLPVRR AGLKSSGFIA 180 ATYMQGHIIA ERKRREKMNQ RFIELSTVIP NLRKMDKATI LSAATRYVKD LQEKLKELEA 240 GGRGSHGRSV ESETVVVVKR PYPHAATAAH DGDGSPLSAS SGTPAAASKQ LPEIEARFTK 300 KSVMVRIHCE NSKAVVVKVL AEIEELHLGI IHANVEEGFP VTAEDIVGRL NSVLLPPVHS 360 SCSSPELETG N

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence Send to blast

MEDSSLFMQW AMTTLHHEHQ QAVAVDDDCG EATTFPSLLA LREASQAAEM IQELIAVDAE  60
DHPANSWSSS DGDATDGSSA DNNNNLAPAA VHHDICPVSS PSNPVARRVV DPSRNVAGSG  120
TSPPVTWNFS AAAAAAQTSG DYGDGMLTET AAATRGPRPD LAYGSLPVRR AGLKSSGFIA  180
ATYMQGHIIA ERKRREKMNQ RFIELSTVIP NLRKMDKATI LSAATRYVKD LQEKLKELEA  240
GGRGSHGRSV ESETVVVVKR PYPHAATAAH DGDGSPLSAS SGTPAAASKQ LPEIEARFTK  300
KSVMVRIHCE NSKAVVVKVL AEIEELHLGI IHANVEEGFP VTAEDIVGRL NSVLLPPVHS  360
SCSSPELETG N

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	195	ERKRRE
2	191	196	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001140919.1	1e-133	uncharacterized protein LOC100272997
Refseq	XP_020403288.1	1e-133	putative HLH DNA-binding domain superfamily protein isoform X1
Refseq	XP_020403289.1	1e-133	putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBL	B4FS75	1e-132	B4FS75_MAIZE; BHLH transcription factor
STRING	GRMZM2G120021_P01	1e-133	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP927	31	143