PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00248.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 329aa MW: 34963.2 Da PI: 7.7178

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00248.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.3e-13	173	218	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +Er+RR++iN++f eL +++P + kK++Ka+iL A+ Y+k+L Zmw_sc00248.1.g00130.1.am.mk 173 HHILAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATIYVKKL 218 6999*********************.....9**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-16	161	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.821	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.40E-15	172	223	No hit	No description
Pfam	PF00010	4.6E-11	173	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-17	173	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-14	175	224	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MEDSSLFMLW ALSTLQHEDP PATPAPASDA GGGHNFSSHS EPVYSASLDC MAPGEPLARE 60 GHRVTGSWSS GDTDSGGASV TAALERDGWS SLSQSSAIYA APRSGGAKQP VSWNFSSKSA 120 RPSKEAINRN CAATARATDD GGGAPLMVQE SPPPRKTNGK SSGSPSSAPY VQHHILAERK 180 RREKINQRFI ELSTVIPGLK KMDKATILSD ATIYVKKLKE KLKAHEDGGS NGHRNRNIES 240 AVLAKKPRIT APDDEDSPSS AATSGALQEI EARISEGNVM VRIHCEDFKG SLVVLLAEVE 300 KLHLSIVYAN AMPFSASTQI IKLNSPVVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	177	182	ERKRRE
2	178	183	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001140525.1	2e-93	uncharacterized protein LOC100272590
TrEMBL	A0A0A9SBV5	5e-98	A0A0A9SBV5_ARUDO; Uncharacterized protein
STRING	GRMZM2G095899_P01	1e-89	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP927	31	143