PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00235.1.g00270.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 374aa    MW: 40987.9 Da    PI: 9.0929
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00235.1.g00270.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.4e-103761226
                                    -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                                    +++ C f++r+ tCkyG+ C+F H+
  Zmw_sc00235.1.g00270.1.sm.mkhc 37 GQKACAFYMRSRTCKYGEDCRFDHP 61
                                    6789********************8 PP
2zf-CCCH36.86.5e-1290114327
                                     S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                     ++ C+++ +tG Ck+G++C+F H++
  Zmw_sc00235.1.g00270.1.sm.mkhc  90 ERVCSYYEKTGKCKFGASCRFDHPK 114
                                     689********************96 PP
3zf-CCCH36.11.1e-11253277226
                                     -S---SGGGGTS--TTTTT-SS-SS CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                     ++  C+f+++tGtCky d+CkF+H+
  Zmw_sc00235.1.g00270.1.sm.mkhc 253 GETVCDFYMKTGTCKYTDKCKFHHP 277
                                     6789********************8 PP
4zf-CCCH38.22.3e-12309332427
                                     ---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                     e C f++++GtCk+G +C+F H+p
  Zmw_sc00235.1.g00270.1.sm.mkhc 309 EVCAFYMKSGTCKFGVQCRFDHPP 332
                                     78********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6383563IPR000571Zinc finger, CCCH-type
SMARTSM003560.00133562IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-53562IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-73761IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-687114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.67687115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-688115IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-990114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-691114IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.31168195IPR000571Zinc finger, CCCH-type
SMARTSM0035656168194IPR000571Zinc finger, CCCH-type
PfamPF146082.4182193No hitNo description
SuperFamilySSF902292.75E-7250279IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-7251278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.549251279IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9253277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-6256277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263305333IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-6305332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6307334IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-5309332IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-9309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MGSHSTVGQS EPLYSSNTMV KRPRLESNLT IYPRRPGQKA CAFYMRSRTC KYGEDCRFDH  60
PHWVPEGEIP NWREKPKSAD STALPVRPSE RVCSYYEKTG KCKFGASCRF DHPKENEMPT  120
LIGRQTIYTA TIDAEVCNVS TDGSTPEKKH TPAGPAEAHN TKGLPIRPRH LTFCNQSPIF  180
SCMYGSTCRY NHPDCPADAA LTAPGAQGIL STPAPNAPAA VLNPVATLLP GFDIHATLMA  240
GEPEPVTYPQ RPGETVCDFY MKTGTCKYTD KCKFHHPIDR SVPRPNESWD PQQTVILTPA  300
GLPRREDAEV CAFYMKSGTC KFGVQCRFDH PPPEEAISRL KAAGGKKGAK KAAKLMAAGG  360
KKGAKKAAKL MAAR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815024.11e-151zinc finger CCCH domain-containing protein 8-like isoform X4
SwissprotQ5ZDJ61e-127C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8
TrEMBLA0A0A9D1N21e-157A0A0A9D1N2_ARUDO; Uncharacterized protein
STRINGPavir.Ea02049.1.p1e-148(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu RS,Xu ZF,Lin MC
    Ab initio studies of alkyl radical reactions: Combination and disproportionation reactions of CH3 with C2H5, and the decomposition of chemically activated C3H8.
    J Chem Phys, 2004. 120(14): p. 6566-73
    [PMID:15267548]