PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00158.1.g00240.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 347aa MW: 36452.9 Da PI: 8.2165

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00158.1.g00240.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.2e-09	233	275	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + + RR+ri +++ L++l+P+ +K++ +++LekA+ Y+k Lq Zmw_sc00158.1.g00240.1.am.mk 233 AAKVRRERIAEKLKILQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 275 5689***************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.176	225	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-12	226	283	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-12	227	286	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.22E-11	227	279	No hit	No description
SMART	SM00353	2.7E-10	231	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-6	235	275	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MWAPVCRGGS LARRALITAS KRDTAAAVVP RAPQLRPVMY DDEPSSMSLE LFGYHHGVVV 60 DGDHDVDSGA ALPAGDLQLA FDDNFKGGGG CDPADYYSWA SYGGGGSGAS SSSSSSVLSF 120 EQAGNGGRHL AAYSTGAGGG DDCAIWMDAA AAGMVDHPAA CNFGFVSPGG SADHAGREIQ 180 ELGSVQPQAK AAQKRARPVG EVQAAAGKKQ CGSSRKTKAK AAAPPTKDHQ SVAAKVRRER 240 IAEKLKILQD LVPNGTKVDL VTMLEKAITY VKFLQLQVKV LAADEFWPAQ GGKAPELSQV 300 KDALDAILAS QHSTWVGEVA ALEGRKEPTR KRWGRGPWAA KDERVSW

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MWAPVCRGGS LARRALITAS KRDTAAAVVP RAPQLRPVMY DDEPSSMSLE LFGYHHGVVV  60
DGDHDVDSGA ALPAGDLQLA FDDNFKGGGG CDPADYYSWA SYGGGGSGAS SSSSSSVLSF  120
EQAGNGGRHL AAYSTGAGGG DDCAIWMDAA AAGMVDHPAA CNFGFVSPGG SADHAGREIQ  180
ELGSVQPQAK AAQKRARPVG EVQAAAGKKQ CGSSRKTKAK AAAPPTKDHQ SVAAKVRRER  240
IAEKLKILQD LVPNGTKVDL VTMLEKAITY VKFLQLQVKV LAADEFWPAQ GGKAPELSQV  300
KDALDAILAS QHSTWVGEVA ALEGRKEPTR KRWGRGPWAA KDERVSW

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455315.1	1e-116	transcription factor bHLH69
TrEMBL	A0A1E5W954	1e-120	A0A1E5W954_9POAL; Transcription factor bHLH83
STRING	Sb03g008290.1	1e-115	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1412	38	117