PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00152.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 527aa    MW: 58646 Da    PI: 5.4143
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00152.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS400.22.1e-1221725261358
                            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 
                                     l+++L++c +av+++++ +++ l+++l +l+s  gdpmqRl ay++e++ arl++s+s lyk+l+++e +   sse ++
  Zmw_sc00152.1.g00050.1.es.mkhc 172 LKQVLIACGKAVDQNNMFATELLISELGQLVSVFGDPMQRLGAYMLEGIIARLSSSGSMLYKSLKCKEPT---SSELMS 247
                                     5799*****************************************************************9...99999* PP

                            GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..ske 156
                                     +++l++e++P++kf+++ aN aI ea++ge+ +HiiDf+i qG QW++L+qa+a+Rp+gpp +RiTg+++++s   +  
  Zmw_sc00152.1.g00050.1.es.mkhc 248 YMTLLYEICPFYKFGYMSANGAIAEAIKGENFIHIIDFQIAQGSQWITLMQAFAARPGGPPCVRITGIDDSNSAyaRGG 326
                                     **********************************************************************988899999 PP

                            GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                                      l  +g rL ++A+++g+pfef++ + ++ +++e+e+L+++p+E++aVn+++qlh+++desvs+e++rd++++++ks++
  Zmw_sc00152.1.g00050.1.es.mkhc 327 GLDIVGMRLYNIAQSCGLPFEFSA-IPTASHEVEFEHLDIRPREVIAVNFAYQLHHVPDESVSIENHRDRIIRMIKSIN 404
                                     ************************.6999************************************************** PP

                            GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                                     Pkvv++veqe+++n+++F+ r +e+l++y+a+f+s+++ lpr+++ r++ E+++++r+ivn++acegaer+erhe ++k
  Zmw_sc00152.1.g00050.1.es.mkhc 405 PKVVTLVEQESNTNTAPFFPRYMETLNHYTAMFESIDVALPRHDKRRMSAEQHCVARDIVNLIACEGAERVERHELFGK 483
                                     ******************************************************************************* PP

                            GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                                     W++r+++aGFk++pls+ +++++++ll+ ++s  yr+ee++g l
  Zmw_sc00152.1.g00050.1.es.mkhc 484 WKARFSMAGFKSYPLSSVVNSTINTLLQSYNSC-YRLEERDGVL 526
                                     *******************************55.******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.669146523IPR005202Transcription factor GRAS
PfamPF035147.2E-120172526IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MSAQASNHPF KCSDDSSQIQ YYNNSVPLGE NGRFYAIQNN LDHHYSSSDD GSHRINSSNP  60
QIFEAQYCTL EPSAGNGVYP AQSSTSSHSI SPISGSPLSQ HDIHSDHMYN SPPTTSCLTE  120
VTDLQIKLKE LENAVLGPEL EISSDSPESL QTNASLRPDN WKQLLGIDTG DLKQVLIACG  180
KAVDQNNMFA TELLISELGQ LVSVFGDPMQ RLGAYMLEGI IARLSSSGSM LYKSLKCKEP  240
TSSELMSYMT LLYEICPFYK FGYMSANGAI AEAIKGENFI HIIDFQIAQG SQWITLMQAF  300
AARPGGPPCV RITGIDDSNS AYARGGGLDI VGMRLYNIAQ SCGLPFEFSA IPTASHEVEF  360
EHLDIRPREV IAVNFAYQLH HVPDESVSIE NHRDRIIRMI KSINPKVVTL VEQESNTNTA  420
PFFPRYMETL NHYTAMFESI DVALPRHDKR RMSAEQHCVA RDIVNLIACE GAERVERHEL  480
FGKWKARFSM AGFKSYPLSS VVNSTINTLL QSYNSCYRLE ERDGVLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-531745186348GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983228.10.0scarecrow-like protein 21
RefseqXP_004983229.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A0A9EAW10.0A0A0A9EAW1_ARUDO; GRAS54
STRINGSi035053m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]