PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00146.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 655aa MW: 68630 Da PI: 8.0849

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00146.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	20.3	9.9e-07	449	506	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC.........TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkas......kapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + Ka +L + ++Y++sLq Zmw_sc00146.1.g00270.1.am.mk 449 SHSLAERVRREKISERMKLLQSLVPGCNkvsylsLMLVCITGKALMLDEIINYVQSLQ 506 8*************************86677776566666778888888888888887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.39E-10	443	510	No hit	No description
SuperFamily	SSF47459	6.94E-14	443	523	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-13	445	523	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.627	445	505	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.5E-8	451	511	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MDPQRSIHAC PCCSGLAGPG SSPAHVVTPR RPRSFLQSSA GSSPHASAAS RLCDAHTPVG 60 MQQAPGAPYV LVRTSTHVSF LEGSSSSSSS RLARSLSNRK TTTRKKPETA AALKIVLRLD 120 PRPGRSAAVQ RRGWHLELAA RPSPSRRPAG PPSAARPTTL LTALFFPLSA SSSRPHSPPT 180 FRRTVSNASQ EMADEHFFPV GDFPSGLGAA PFFGSGPYAP PVPPPGLESL DAAACAAAMA 240 PFGMLPWASE HPIPTDSAAT ATAHFDSALS SLVTSPAHAG CFGDDDDVAI GDLIGRLGSI 300 CNNAAASANN SCYSTPLSSP PRGASSPAGL AFRQGGHFHY PGPGAPPLEG AGGRLSRVAS 360 SKSLGSGAAP ASENVADAET NPAVPAKGDG AARKRKAATA GKGKAXXXKV TGDGDTDDVA 420 AGDAEQDTKP EPAKDYIHVR ARRGQATDSH SLAERVRREK ISERMKLLQS LVPGCNKVSY 480 LSLMLVCITG KALMLDEIIN YVQSLQRQVE FLSMKLSTMN PELDIDAQFL PASDNDAIVS 540 PPPSSDSELR SGFIWLRPAC PPSQRLINTM HHHQTVPLGY PDQQDPFAGA AAVHPAMLDP 600 CTTGSAFYHG AGAGFGGWDA AQDELIQSVV PNQHHRHHQD QDQQHPDRGH GFHGT

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MDPQRSIHAC PCCSGLAGPG SSPAHVVTPR RPRSFLQSSA GSSPHASAAS RLCDAHTPVG  60
MQQAPGAPYV LVRTSTHVSF LEGSSSSSSS RLARSLSNRK TTTRKKPETA AALKIVLRLD  120
PRPGRSAAVQ RRGWHLELAA RPSPSRRPAG PPSAARPTTL LTALFFPLSA SSSRPHSPPT  180
FRRTVSNASQ EMADEHFFPV GDFPSGLGAA PFFGSGPYAP PVPPPGLESL DAAACAAAMA  240
PFGMLPWASE HPIPTDSAAT ATAHFDSALS SLVTSPAHAG CFGDDDDVAI GDLIGRLGSI  300
CNNAAASANN SCYSTPLSSP PRGASSPAGL AFRQGGHFHY PGPGAPPLEG AGGRLSRVAS  360
SKSLGSGAAP ASENVADAET NPAVPAKGDG AARKRKAATA GKGKAXXXKV TGDGDTDDVA  420
AGDAEQDTKP EPAKDYIHVR ARRGQATDSH SLAERVRREK ISERMKLLQS LVPGCNKVSY  480
LSLMLVCITG KALMLDEIIN YVQSLQRQVE FLSMKLSTMN PELDIDAQFL PASDNDAIVS  540
PPPSSDSELR SGFIWLRPAC PPSQRLINTM HHHQTVPLGY PDQQDPFAGA AAVHPAMLDP  600
CTTGSAFYHG AGAGFGGWDA AQDELIQSVV PNQHHRHHQD QDQQHPDRGH GFHGT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025825248.1	1e-103	transcription factor bHLH62-like
TrEMBL	A0A0A9GES5	1e-113	A0A0A9GES5_ARUDO; Uncharacterized protein
STRING	MLOC_66841.1	5e-93	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12547	28	35