PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00142.1.g00350.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 207aa MW: 21735.2 Da PI: 7.6272

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00142.1.g00350.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	102	122	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg+ F ++ L H++ H Zmw_sc00142.1.g00350.1.am.mk 102 CTYCGRKFYSSQALGGHQNAH 122 ******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.23E-7	90	144	No hit	No description
PROSITE profile	PS50157	11.78	100	127	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	102	122	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MRTIWARPRR TATARSPAGQ HVDDDDDGAA SARYATAGPT NGGRPLTSPN GAAAGDDPTR 60 QFQSASEIII IVVAALMEVD LELSLLHAAA APEQEPTGFF LCTYCGRKFY SSQALGGHQN 120 AHKYERTLAK RRMEIALAMR AHGAAPGASS RSRADAGVAG GAEEQPGRAR MGAKQADAAI 180 SGLLLGKSSS SEYGVERADE LDLSLRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004984245.1	8e-41	zinc finger protein STAMENLESS 1
TrEMBL	A0A1E5UY86	2e-39	A0A1E5UY86_9POAL; Uncharacterized protein
TrEMBL	K4AGD0	2e-39	K4AGD0_SETIT; Uncharacterized protein
STRING	Si037937m	3e-40	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP183	36	274