PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00122.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | HB-other | ||||||||
Protein Properties | Length: 342aa MW: 36970.3 Da PI: 6.1214 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 21.8 | 3.3e-07 | 17 | 75 | 10 | 56 |
HHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56 +++ e+e+ ++ ++ p ++ + LA+k ++ +qV +WFqNrR+ ++ Zmw_sc00122.1.g00040.1.sm.mkhc 17 SEVAEMEARLKQlhHSVPGRDVLQSLADKFsasperagrvAVQPKQVWNWFQNRRYSYR 75 56666666666555667888888888888888888888889***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0021 | 7 | 81 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 9.426 | 13 | 77 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.23E-5 | 13 | 75 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-6 | 13 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.55E-9 | 13 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.4E-4 | 17 | 75 | IPR001356 | Homeobox domain |
Pfam | PF16719 | 2.7E-21 | 139 | 217 | IPR032001 | SAWADEE domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 342 aa Download sequence Send to blast |
MGRPPSSGAP AFRFLPSEVA EMEARLKQLH HSVPGRDVLQ SLADKFSASP ERAGRVAVQP 60 KQVWNWFQNR RYSYRAKGVR PAQQPPPPPS KMTPSGADRV QHATAASAFR AAQTPAAAAG 120 ANPGSTPSAG KGAVEGAPIE FEAKSARDGA WYDVAGFLSH RMFETGDPEV RVRFSGFGAE 180 EDEWVNVRKC VRQRSLPCEA TECVAVLPGD LILCFQEIVP LRKVCRRPET DYRLQILHAS 240 RAAAAASDVH APPSEVRMES ASEEKSPAGQ EPVKQHKMMD VNTDEVTMVS DQGEAAGKTA 300 PPTPSAQAET HNNSSSDVDA EPAPVVEVDD ERQVVDKMEE GK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4iup_A | 1e-28 | 137 | 217 | 2 | 82 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iup_B | 1e-28 | 137 | 217 | 2 | 82 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_A | 1e-28 | 137 | 217 | 2 | 82 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuq_B | 1e-28 | 137 | 217 | 2 | 82 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iur_A | 1e-28 | 137 | 217 | 2 | 82 | SHH1 SAWADEE |
4iur_B | 1e-28 | 137 | 217 | 2 | 82 | SHH1 SAWADEE |
4iut_A | 1e-28 | 137 | 217 | 2 | 82 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iut_B | 1e-28 | 137 | 217 | 2 | 82 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_A | 1e-28 | 137 | 217 | 2 | 82 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuu_B | 1e-28 | 137 | 217 | 2 | 82 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_A | 1e-28 | 137 | 217 | 2 | 82 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
4iuv_B | 1e-28 | 137 | 217 | 2 | 82 | SAWADEE HOMEODOMAIN HOMOLOG 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956551.1 | 1e-169 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Refseq | XP_022680276.1 | 1e-169 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Refseq | XP_022680277.1 | 1e-169 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Refseq | XP_022680278.1 | 1e-169 | protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
Swissprot | Q8RWJ7 | 2e-89 | SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
TrEMBL | A0A1D6EP15 | 1e-171 | A0A1D6EP15_MAIZE; Protein SAWADEE HOMEODOMAIN HOMOLOG 2 | ||||
STRING | Si030167m | 1e-169 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4190 | 29 | 48 |