PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00113.1.g00280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NF-YB | ||||||||
Protein Properties | Length: 385aa MW: 41525.2 Da PI: 7.5957 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 182.9 | 2.7e-57 | 192 | 287 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yv+p Zmw_sc00113.1.g00280.1.am.mk 192 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVDP 272 89******************************************************************************* PP NF-YB 83 lkvylkkyrelegek 97 lk yl+k+re+ege+ Zmw_sc00113.1.g00280.1.am.mk 273 LKHYLHKFREIEGER 287 ************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.2E-54 | 189 | 305 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.07E-39 | 194 | 299 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.9E-27 | 197 | 261 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.2E-19 | 225 | 243 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 228 | 244 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.2E-19 | 244 | 262 | No hit | No description |
PRINTS | PR00615 | 2.2E-19 | 263 | 281 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MSVGDDSSVL CLLPPVCSSG PSANPTWHTG NSCTSWPGRR PTCSRTHCNG QDASDVASIH 60 SDVIARWQIL IRKRTVGGTP RSYLDAFLSA RSNGPAIFHH RSHFRAVENA LLEEIFRSSA 120 VDPVRALLTA YRDWLERFDE ISRSFSALLR LLYRALFLDL RLQRERSEAA MPDSDNDSGG 180 PSNAGGDLSS SREQDRFLPI ANVSRIMKKA LPANAKISKD AKETVQECVS EFISFITGEA 240 SDKCQREKRK TINGDDLLWA MTTLGFEEYV DPLKHYLHKF REIEGERAAA SSGGGSTAAA 300 QQQQSDTSRN VNAGGVAYGG YGGPGAGGMM MMMGQPPMYG GSPQQQQQQQ HQLQHHMATG 360 GGGGYGHLGG GSSSASSGLG GQDRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-44 | 186 | 282 | 1 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |