PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00112.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 228aa MW: 25351.8 Da PI: 5.3125 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 74.6 | 2.4e-23 | 43 | 105 | 70 | 129 |
NAM 70 tgkrknratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmheyrle 129 ++ r nrat++g+Wkatgkdke+++++ l vg+kktLvfy+grapkgekt W+mheyrle Zmw_sc00112.1.g00110.1.sm.mk 43 NEGRINRATNTGFWKATGKDKEIYQASAMLptiVGMKKTLVFYTGRAPKGEKTGWIMHEYRLE 105 57899********************74433666****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.014 | 1 | 142 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.57E-32 | 19 | 142 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-17 | 22 | 104 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MADHQEQEGI RGGVDDCCMN LPPGFRIHPY DEEIITFYLM PKNEGRINRA TNTGFWKATG 60 KDKEIYQASA MLPTIVGMKK TLVFYTGRAP KGEKTGWIMH EYRLEGSGKL YFPTSSSNST 120 ISKGVPDPHA FHEWVICKVF KSSRNKEVHV PQSEEARANN DIDQSTMSFS TSIQFSIGPE 180 DDFLVELGVL CPNMDPTMPF YSTTDASTSV APMMPPMTSM GTMGIDGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-19 | 19 | 141 | 15 | 164 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-19 | 19 | 141 | 15 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-19 | 19 | 141 | 15 | 164 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-19 | 19 | 141 | 15 | 164 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-19 | 19 | 143 | 18 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-19 | 19 | 143 | 18 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-19 | 19 | 143 | 18 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-19 | 19 | 143 | 18 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-19 | 19 | 143 | 18 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-19 | 19 | 143 | 18 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-19 | 19 | 143 | 18 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-19 | 19 | 143 | 18 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-19 | 19 | 141 | 15 | 164 | NAC domain-containing protein 19 |
4dul_B | 3e-19 | 19 | 141 | 15 | 164 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025801540.1 | 3e-54 | NAC domain-containing protein 79-like | ||||
Swissprot | Q9FLJ2 | 8e-32 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A1E5V4C4 | 2e-56 | A0A1E5V4C4_9POAL; NAC domain-containing protein 79 | ||||
STRING | Pavir.Ba02955.1.p | 3e-49 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27924 | 3 | 5 |
Publications ? help Back to Top | |||
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