PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00106.1.g00190.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 310aa MW: 33316.6 Da PI: 8.8921

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00106.1.g00190.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.7	2.1e-13	154	199	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +Er+RR++iN++f eL +++P + kK++Ka+iL A+ Y+k+L Zmw_sc00106.1.g00190.1.am.mk 154 HHILAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATIYVKKL 199 6999*********************.....9**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.71E-16	142	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.821	150	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.32E-15	153	204	No hit	No description
Pfam	PF00010	4.2E-11	154	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.4E-17	154	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-14	156	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEDSSLFMLW ALSTLQHEDP PATPGPASDA GGGHNFSSHP EPVYSASLDC KAPGEPLARE 60 GHQVTGSWSS GDTDSGGASV TAALERDGWS SLSQSSDIYA APRSGGAKQP KLCRHRKGHG 120 RRRCAPLMVQ ESPPPRRTNG KSSGSPSSAP YVQHHILAER KRREKINQRF IELSTVIPGL 180 KKMDKATILS DATIYVKKLK EKLKAHEDGG SNGHRNRNIE SAVLAKKPRI TAPDDEDTPS 240 SAATSGALPE IEARISEGNV MVRIHCEDFK GSLVVLLAEV EKLHLSIVYA NAIPFSASTQ 300 IIKLNTPVVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	163	ERKRRE
2	159	164	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001140525.1	1e-83	uncharacterized protein LOC100272590
TrEMBL	A0A0A9SBV5	3e-87	A0A0A9SBV5_ARUDO; Uncharacterized protein
STRING	GRMZM2G095899_P01	6e-80	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP927	31	143