PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00106.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 368aa MW: 39114.7 Da PI: 5.7312

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00106.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.6	6e-15	184	229	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++N++f eL +++P++ +K++Ka+iL A++Y+k+Lq Zmw_sc00106.1.g00180.1.am.mk 184 HIIAERKRREKMNQRFIELSTVIPNL-----RKMDKATILSAATRYVKDLQ 229 899********************9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.631	179	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.3E-12	184	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-17	184	240	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-18	184	237	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.62E-16	184	233	No hit	No description
SMART	SM00353	3.0E-15	185	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MEDSSLFMQW AMTTLHHEHQ QAVAVDDDCG EATTFPSLQA LREASQAAEM IQELIAVDAE 60 DHPANSWSSS DGDATDGSSA DNNNNLAPAA VHHDICPVSS PSNPVARRVV DPSRNVAGSG 120 TSPSVTWNFS AAAAAAQTSG DGMLTETAAA TRGPRPDLAY GSLPVRRAGL KSSGFIAATY 180 MQGHIIAERK RREKMNQRFI ELSTVIPNLR KMDKATILSA ATRYVKDLQE KLKELEAGGR 240 GSRGRSVESE TVVVVKRPYP HAATAAHDGD GSPLTASSGT PAAASKQLPE IEARFTNKSV 300 MVRIHCENGK AVVVKVLAEI EELHLGIIHA NVEEGFPVTA EDIVGRLNSV LLPPVHSSCS 360 SPELETGN

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MEDSSLFMQW AMTTLHHEHQ QAVAVDDDCG EATTFPSLQA LREASQAAEM IQELIAVDAE  60
DHPANSWSSS DGDATDGSSA DNNNNLAPAA VHHDICPVSS PSNPVARRVV DPSRNVAGSG  120
TSPSVTWNFS AAAAAAQTSG DGMLTETAAA TRGPRPDLAY GSLPVRRAGL KSSGFIAATY  180
MQGHIIAERK RREKMNQRFI ELSTVIPNLR KMDKATILSA ATRYVKDLQE KLKELEAGGR  240
GSRGRSVESE TVVVVKRPYP HAATAAHDGD GSPLTASSGT PAAASKQLPE IEARFTNKSV  300
MVRIHCENGK AVVVKVLAEI EELHLGIIHA NVEEGFPVTA EDIVGRLNSV LLPPVHSSCS  360
SPELETGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	192	ERKRRE
2	188	193	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001140919.1	1e-135	uncharacterized protein LOC100272997
Refseq	XP_020403288.1	1e-135	putative HLH DNA-binding domain superfamily protein isoform X1
Refseq	XP_020403289.1	1e-135	putative HLH DNA-binding domain superfamily protein isoform X1
TrEMBL	B4FS75	1e-133	B4FS75_MAIZE; BHLH transcription factor
STRING	GRMZM2G120021_P01	1e-134	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP927	31	143