PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00093.1.g00270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 263aa MW: 28399.8 Da PI: 5.2018 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 69.8 | 3.8e-22 | 101 | 159 | 2 | 57 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--S CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHn 57 dDg+ WrKYG K + ++++ r Y+rC+++ gC +kk+v++++edp+++++tY geH+ Zmw_sc00093.1.g00270.1.sm.mk 101 DDGFVWRKYGEKIISDQRYRRFYFRCSYRdehGCGAKKQVQQTQEDPSLFQTTYFGEHT 159 8***************************99999*************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.7E-23 | 94 | 160 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.197 | 95 | 163 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-22 | 98 | 162 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-28 | 100 | 164 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-22 | 101 | 159 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MATTAESTSA ACELVAGARE PAVRLLALLQ AIGADSDKQS LAKQIIRCID RALAAVRGAG 60 DDKKRRPPTH GPTTRPPAGS SKRRVTGRGE TGARVVSSTI DDGFVWRKYG EKIISDQRYR 120 RFYFRCSYRD EHGCGAKKQV QQTQEDPSLF QTTYFGEHTP ACPRDDAPVA VVDRTSVPQV 180 PFLASSSVGA GNDSLCHGDD EAPPSLPVKA ELMQANVAEF TEDCPVDDRL MEWASADVSF 240 ASPASVGLES LDGLEELISL LWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-15 | 95 | 159 | 3 | 67 | OsWRKY45 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00070 | PBM | Transfer from AT5G01900 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025810145.1 | 2e-64 | probable WRKY transcription factor 38 | ||||
TrEMBL | A0A2T7ECH4 | 5e-68 | A0A2T7ECH4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J05250.1.p | 1e-68 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18697 | 6 | 9 |