PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00076.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 304aa MW: 32787.7 Da PI: 10.336 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.1 | 3.8e-41 | 76 | 151 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C v++C+adls++++yhrrhkvCe+hsk+pvv+v g+e+rfCqqCsrfh+lsefDe+krsCr+rL++hn+rrrk+q Zmw_sc00076.1.g00070.1.sm.mk 76 CSVDRCRADLSRCRDYHRRHKVCEAHSKTPVVVVGGQEKRFCQQCSRFHMLSEFDEGKRSCRKRLDGHNRRRRKPQ 151 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.1E-33 | 70 | 137 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.923 | 73 | 150 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.18E-38 | 75 | 155 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.6E-30 | 76 | 149 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MNRAAVTSEA SSWGAAADRG PIMLSFAGPS SSTSPAAEIQ FQDFSVGLVR RAQPPGSSGA 60 RRRSRGASGG GVPEACSVDR CRADLSRCRD YHRRHKVCEA HSKTPVVVVG GQEKRFCQQC 120 SRFHMLSEFD EGKRSCRKRL DGHNRRRRKP QLNQFAIHPQ LATRSGQNSN SMRLIDGQQA 180 FSISFAGTFK APKQFPFSQE GGSILNEFHP NNLLARNDSH TRSSGLSGML GPEYALSLLS 240 SSLHRPSPAA GPAQVTSPLA CFIATSQDAT TAAAVGYASG AAHHTFAPDA MFEDPSQALP 300 FIWQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 66 | 149 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 132 | 149 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450775.1 | 1e-108 | putative squamosa promoter-binding-like protein 19 isoform X1 | ||||
Refseq | XP_021317606.1 | 1e-108 | putative squamosa promoter-binding-like protein 19 isoform X1 | ||||
Refseq | XP_021317607.1 | 1e-108 | putative squamosa promoter-binding-like protein 19 isoform X1 | ||||
Swissprot | Q2R3Y1 | 6e-77 | SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19 | ||||
TrEMBL | C5Y2L5 | 1e-106 | C5Y2L5_SORBI; Uncharacterized protein | ||||
STRING | Sb05g017510.1 | 1e-107 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12961 | 25 | 32 |