PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00070.1.g00220.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 532aa MW: 57208.4 Da PI: 5.3306

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00070.1.g00220.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.2	5.9e-13	310	355	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f++Lr+llP++ K +K ++L A Y+k+L+ Zmw_sc00070.1.g00220.1.am.mk 310 HMMSERKRREKLNDSFQTLRSLLPPC-----SKKDKTTVLINAASYLKKLE 355 7899*******************9.....699************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.28E-17	302	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.205	305	354	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	310	372	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.39E-11	310	353	No hit	No description
Pfam	PF00010	2.0E-10	310	355	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-13	311	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 532 aa Download sequence Send to blast
MKISCGVLPW RSHHGIGAVQ TGGVFPSRRA QERTGPWPLI RPDRSIRGAS SPPIATFDRS 60 DFHDGFAFLA ELAPPLALRP LSLLLWCGLD LQLPSANDVP GLRGAADDDP FWPALADCAA 120 SFLAVDDIDI TGPPSDKVVG GMVMDMDASC FMPEEQHERT YSSSPPSSKR SLSMDDSAGT 180 ISSPFSFALD GADASLADAG VFDPSAGDDA AIMRAMMAVL SSASPSSSES SSPPQSQETI 240 SSIQQAAAVY PYGENNNNNN YYNGHVAVGS ITSLAVAPEQ ATSLTNSLGG GRQEQERVAA 300 NNNNSSQVYH MMSERKRREK LNDSFQTLRS LLPPCSKKDK TTVLINAASY LKKLESEVSE 360 LEEKNAKLER HVPRDDGGAA ASVAAQRRAK IQISRAASDA DQMNLTVMMM VECDIVDLVL 420 HVLERLRWMA GVSVLSVDAD TYSRQVLLKA IASIKLQITV RALLALHYVA ANSYKWHFEQ 480 SKRIDISVLR DLMQDGDAWN EASFHEAMKK VVHEATSSAA AGASAAPQVA TA

Sequence ? help Back to Top

Protein Sequence Length: 532 aa Download sequence Send to blast

MKISCGVLPW RSHHGIGAVQ TGGVFPSRRA QERTGPWPLI RPDRSIRGAS SPPIATFDRS  60
DFHDGFAFLA ELAPPLALRP LSLLLWCGLD LQLPSANDVP GLRGAADDDP FWPALADCAA  120
SFLAVDDIDI TGPPSDKVVG GMVMDMDASC FMPEEQHERT YSSSPPSSKR SLSMDDSAGT  180
ISSPFSFALD GADASLADAG VFDPSAGDDA AIMRAMMAVL SSASPSSSES SSPPQSQETI  240
SSIQQAAAVY PYGENNNNNN YYNGHVAVGS ITSLAVAPEQ ATSLTNSLGG GRQEQERVAA  300
NNNNSSQVYH MMSERKRREK LNDSFQTLRS LLPPCSKKDK TTVLINAASY LKKLESEVSE  360
LEEKNAKLER HVPRDDGGAA ASVAAQRRAK IQISRAASDA DQMNLTVMMM VECDIVDLVL  420
HVLERLRWMA GVSVLSVDAD TYSRQVLLKA IASIKLQITV RALLALHYVA ANSYKWHFEQ  480
SKRIDISVLR DLMQDGDAWN EASFHEAMKK VVHEATSSAA AGASAAPQVA TA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	313	318	ERKRRE
2	314	319	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969032.1	1e-114	putative transcription factor bHLH041
TrEMBL	A0A0A9RPB9	1e-117	A0A0A9RPB9_ARUDO; Uncharacterized protein
STRING	Si001494m	1e-113	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10174	31	36