PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00060.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 330aa MW: 34609.6 Da PI: 6.5656

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00060.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	81.3	1.5e-25	4	113	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGa......snvlkllkalpeeeredamsslvyeAearar 70 +C++C+vlr++C+++C+++p++ p++q++++ +++k++G+ + +l+ll+a+ ++ ++++sl+yeA+ r+ Zmw_sc00060.1.g00070.1.sm.mk 4 SCNGCRVLRKGCSDGCTIRPCLqwikaPEAQANATVFLAKFYGRxxxxgrAGLLNLLAAAGPDGPAAVFRSLLYEACGRIV 84 6***************************************862222226899*********************** PP DUF260 71 dPvyGavgvilklqqqleqlkaelallke 99 +PvyG+vg+++++q++ +q+++e++l +e Zmw_sc00060.1.g00070.1.sm.mk 85 NPVYGSVGLLWSGQWHACQAAVEAVLKGE 113 ********************9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	14.094	3	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-20	4	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDGCT IRPCLQWIKA PEAQANATVF LAKFYGRXXX XGRAGLLNLL 60 AAAGPDGPAA VFRSLLYEAC GRIVNPVYGS VGLLWSGQWH ACQAAVEAVL KGEPVVRVAA 120 NSASSAEHPE TEATPPLSAR AACDIRHVGA KDRDASAAAA AAAVADLLRV SRAGRTKFKR 180 ASSSSITSKT KPAVVGASKP DNSRASPRPS TPTQEVRDPV VGLGSGDELD DARALSHREA 240 SAGSHQHLDD HCDVAAAQDG SSEDTEAEAG SHVSQAEEHH SHVHASSQDE DDEEVDLELA 300 LGLEPVAVRH EARSSTCNLR RLSAVSILMG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310953.1	3e-95	LOB domain-containing protein 42-like
TrEMBL	I1IL92	6e-94	I1IL92_BRADI; Uncharacterized protein
STRING	BRADI4G16740.1	1e-94	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127