PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00044.1.g00830.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 331aa MW: 37221.5 Da PI: 5.6854

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00044.1.g00830.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.4	5.8e-53	5	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPtdeelv +yL+kkv++++++l +vi++vd+y++ePw+L+ k+ e+++wyfF +d+ky+tg+r+nrat Zmw_sc00044.1.g00830.1.sm.mk 5 VPPGFRFHPTDEELVGYYLRKKVASQRIDL-DVIRDVDLYRIEPWHLQDhcKIGYeEQSDWYFFNYKDRKYPTGTRTNRAT 84 69**************************.9***********942443332556****************** PP NAM 79 ksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 +g+Wkatg+dk+v +k ++ l+g++ktLvfy+grap+g+ktdW+mheyrle Zmw_sc00044.1.g00830.1.sm.mk 85 LTGFWKATGRDKAVRDKhGRGLIGMRKTLVFYTGRAPNGRKTDWIMHEYRLE 136 ************966678**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-57	3	153	IPR003441	NAC domain
PROSITE profile	PS51005	58.378	5	153	IPR003441	NAC domain
Pfam	PF02365	5.9E-28	6	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MESCVPPGFR FHPTDEELVG YYLRKKVASQ RIDLDVIRDV DLYRIEPWHL QDHCKIGYEE 60 QSDWYFFNYK DRKYPTGTRT NRATLTGFWK ATGRDKAVRD KHGRGLIGMR KTLVFYTGRA 120 PNGRKTDWIM HEYRLETDEN AEEGWVVCRA FKKRAVHPQR GLVGGDMGYS FHDPRTTGTA 180 ARFKQEPPQL DAGAAAALLQ YSTCLSELPQ LESPPPPNQD SHRGTADGER DYDLDPNEQD 240 AAVSTDWRAL DRFVASQLSP DGERLSRGLP QELGKPAGEL AGVDNGDESD IVALLLLDGV 300 PEEDAGLLDS VASTSACLRK NEARCGTRYP K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-46	2	154	12	169	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269\|PubMed:17581762, ECO:0000269\|PubMed:17722694}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014661306.1	1e-162	NAC domain-containing protein 105
Refseq	XP_022678690.1	1e-162	NAC domain-containing protein 105
Refseq	XP_022678691.1	1e-162	NAC domain-containing protein 105
Swissprot	O65508	2e-97	NAC76_ARATH; NAC domain-containing protein 76
Swissprot	Q9SL41	1e-97	NAC37_ARATH; NAC domain-containing protein 37
TrEMBL	A0A2S3IP75	1e-151	A0A2S3IP75_9POAL; Uncharacterized protein
STRING	Pavir.Ia02924.1.p	1e-150	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3625	37	68

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Negi S,Tak H,Ganapathi TR Cloning and functional characterization of MusaVND1 using transgenic banana plants. Transgenic Res., 2015. 24(3): p. 571-85 [PMID:25523085] Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]