PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00034.1.g00570.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 332aa MW: 34787.2 Da PI: 8.3951

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00034.1.g00570.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	103.9	1e-32	35	89	4	57
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 +Y+eClkNhAaslGghavDGCgEfmp +g+ +++a+lkCaACgCHRnFHRr++ Zmw_sc00034.1.g00570.1.sm.mk 35 PMYRECLKNHAASLGGHAVDGCGEFMPLPGAIaADPASLKCAACGCHRNFHRRTP 89 57**************************9999*****************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	7.4E-28	36	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.276	37	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-18	37	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.8E-30	37	88	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	2.02E-16	182	252	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-28	185	253	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.4E-23	194	250	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEAMDVKYKT AAFPNGGAVK KVKPAAVPPA AVGEPMYREC LKNHAASLGG HAVDGCGEFM 60 PLPGAIAADP ASLKCAACGC HRNFHRRTPP RREETPEDRV PAVVDGDDSD SDSDASEYDE 120 ERSLSPPLLH HFPAPVAQQP PPPPAPYIPS APHMLLSLGS GAPGAAITAV QRLPVHQLTS 180 PSSAPPGGGG AVPRKRFRTK FTAEQKQRMQ ELSERLGWRL QKRDEAIVDE WCRDIGVGKG 240 VFKVWMHNNK HNFLGGHSAR RSASASAYSG APTAAAPLHT PTPAGSAPPF HPSVASPPPP 300 PVLTSSPPAA PAPTVPAGHQ ENINGSSSPQ SA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	7e-21	194	252	17	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001145929.2	1e-126	uncharacterized protein LOC100279452
Swissprot	Q6ER21	1e-88	ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBL	B6TFI1	1e-124	B6TFI1_MAIZE; ZF-HD homeobox protein
TrEMBL	K0DG72	1e-124	K0DG72_MAIZE; ZHD2 ZF-HD type transcription factor (Fragment)
STRING	GRMZM2G161315_P01	1e-125	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3646	33	74