PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00020.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 331aa MW: 35083.1 Da PI: 6.4436

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00020.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.9	1.4e-27	4	112	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkal.....peeeredamsslvyeAearard 71 +C++C+vlr++C++ C+++p++ p++q++++ +++k++G++ +l+ll+a + r+++++sl+yeA+ r+ + Zmw_sc00020.1.g00100.1.am.mk 4 SCNGCRVLRKGCSDACTIRPCLqwiktPEAQANATVFLAKFYGRAGLLNLLAAPgggagADGLRPAVFRSLLYEACGRIVN 84 6************************************************996666556677************** PP DUF260 72 PvyGavgvilklqqqleqlkaelallke 99 PvyG+vg+++++q+q +q+++e++l +e Zmw_sc00020.1.g00100.1.am.mk 85 PVYGSVGLLWSGQWQACQAAVEAVLKGE 112 ********************998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.52	3	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-22	4	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDACT IRPCLQWIKT PEAQANATVF LAKFYGRAGL LNLLAAPGGG 60 AGADGLRPAV FRSLLYEACG RIVNPVYGSV GLLWSGQWQA CQAAVEAVLK GEPLVRVASA 120 AAVDQPEAAA SPPLGTRAAC DIRHVAKDRD AAAAVDLLRV SRAGRTKFKR AATSSTTSRA 180 KAKTTTTTTK PDNGRASPRP GTPTQEQEEL VVVAGSGDEL DDAHAPTSHH DHEESAGSHQ 240 HLSDRDRAAA QEGSSEDTEA EAGSHVSQAE EHHSHVHASL HDEEDEDEEV GLELTLGLEP 300 VVLRQPRSPS CNLRRLSTVS SLMATRLELP A

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024310953.1	1e-108	LOB domain-containing protein 42-like
TrEMBL	I1IL92	1e-106	I1IL92_BRADI; Uncharacterized protein
STRING	BRADI4G16740.1	1e-107	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127