PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00014.1.g00270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 221aa MW: 23818 Da PI: 7.2371 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9e-06 | 77 | 99 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+++ L H+++H Zmw_sc00014.1.g00270.1.sm.mk 77 HRCSGCGKVFPSHQALGGHMSSH 99 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.6E-9 | 77 | 99 | No hit | No description |
PROSITE profile | PS50157 | 10.159 | 77 | 104 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.7E-10 | 77 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.011 | 77 | 99 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 79 | 99 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.6E-9 | 141 | 168 | No hit | No description |
Pfam | PF13912 | 1.8E-13 | 145 | 169 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 146 | 168 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.349 | 146 | 168 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 148 | 168 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAVDTVLDAP AGLQRRLSCR DLEYEGDQVQ AWAKRKRSSR RHPRAPTEEE HLALCLLMLG 60 RDHRDCEDQD PAPATEHRCS GCGKVFPSHQ ALGGHMSSHR SRPTPAAVAT ATTITTVVED 120 PVVATAASSA STPATSCSTS GTGRVHECSV CKKTFPTGQA LGGHKRCHYL GAIVTPERGF 180 DLNIPALPDI SEWCVPVTVA EEEDVVLSPL AFKKPRFMIP A |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562286.1 | 3e-56 | zinc finger protein 1 | ||||
TrEMBL | A0A0A9AQT5 | 5e-60 | A0A0A9AQT5_ARUDO; Uncharacterized protein | ||||
STRING | BRADI1G14750.1 | 1e-55 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 |