PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00669.1.g00010.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 333aa MW: 35241.5 Da PI: 7.7184 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.5 | 2.4e-13 | 173 | 218 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +Er+RR++iN++f eL +++P + kK++Ka+iL A+ Y+k+L Zjn_sc00669.1.g00010.1.sm.mk 173 HHILAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATIYVKKL 218 6999***********************.....9****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.37E-16 | 161 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.821 | 169 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.65E-15 | 172 | 223 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.4E-17 | 173 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-11 | 173 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-14 | 175 | 224 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MEDSSLFMLW ALSTLQHEDP PATPAPASDA GGGHNFSSHS EPVYSASLDC MAPGEPLARE 60 GHRVTGSWSS GDTDSGGASV TAALERNGWS SLSQSSAIYA ALRSGGAKQP VSWNFSSKSA 120 RPSKEAINRN CAATARATDD GGGAPLMVQE SPPPRKTNGK SSGSPSSAPY VQHHILAERK 180 RREKINQRFI ELSTVIPGLK KMDKATILSD ATIYVKKLKE KLKAHEDGGS NGHRNRNIES 240 AVLAKKPRIT APDDEDSPSS AATSGALPEI EARISEGNVM VRIHCEDFKG SLVVLLAEVE 300 QLHLSIVYAN AMPFSASTQI ISIMAQASGG GLR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 177 | 182 | ERKRRE |
2 | 178 | 183 | RKRREK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039963 | 2e-38 | BT039963.1 Zea mays full-length cDNA clone ZM_BFc0054N17 mRNA, complete cds. | |||
GenBank | KJ726786 | 2e-38 | KJ726786.1 Zea mays clone pUT2107 bHLH transcription factor (bHLH71) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001140525.1 | 3e-95 | uncharacterized protein LOC100272590 | ||||
TrEMBL | A0A1E5WCW8 | 1e-99 | A0A1E5WCW8_9POAL; Transcription factor bHLH25 | ||||
STRING | GRMZM2G095899_P01 | 1e-91 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 4e-36 | bHLH family protein |