PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00216.1.g00120.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 636aa MW: 70127.9 Da PI: 6.6484 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 51.9 | 2.2e-16 | 11 | 81 | 2 | 72 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardP 72 C aC+++rrkC++dCv+ap+f ++ ++f ++ + FGas v++ l++ ++ er +a++ lv A a + P Zjn_sc00216.1.g00120.1.am.mk 11 CVACRHMRRKCEPDCVFAPHFGPDDGERFGALDRAFGASFVSQQLADREPRERAAAIEMLVRIAIASVPRP 81 9********************************************************99998887777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 12.63 | 9 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.7E-15 | 11 | 81 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MASSEEAEKV CVACRHMRRK CEPDCVFAPH FGPDDGERFG ALDRAFGASF VSQQLADREP 60 RERAAAIEML VRIAIASVPR PAGVKAQQEA AAAQISREQA LIRQYHTGTG FGVPAYQSAE 120 YQAMIASHQE MLMRNAGAVY QPLELEELLQ GAAAKQKSTL QPVAELQQQR TAAEEVARHH 180 DMVMRQAAAA QNYQALGLEQ QREGAAAKQK SILQPVAELQ QQRTAADVVA RYHDMVMRQA 240 AAAVQNYQAL GLEQQREGAA AKQKSMLQPV AELQQQRTAA DEVARYHDMM MRQAAAAAVQ 300 NYQALGLEQQ RESAAAKQKS MLQPVAELQQ ERTAADEVAR HHAMMMRQAA AAQNYLGIEQ 360 QREGAAAKQK SMLQPVAELQ QQRTAAEEVT RLHDKMMQQA AAAQNYQALG LEQQHQNRQL 420 AEGVMHQTEL TAEAAKRATA EEAAGVREVD MVLQSLRQAA VEEQYMDNYL RAVMLETVAD 480 GQQQQHPLHH DQAGQNAAML QQKLAQGIVN TQKIDQQIAI AQQHWEKKLT MMQQAAANAP 540 AMRGEQPQPQ RQTRNAQFQK ESSLPPLPTQ PRHAGGASGA RTMPFLPGRS ADSEAFLVQP 600 SLPSLPPSLA DTPRQQQNDG GNEDLSVDPT LRLWNH |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP36265 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.4 | 1e-14 | LBD family protein |