PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00150.1.g00130.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 448aa MW: 49705.5 Da PI: 10.1436 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 156.6 | 1e-48 | 115 | 240 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgy 82 +pGfrFhPt+eel+++yL+++vegk++++ e i+ vd+y+++PwdLp+ ++ ++kew+f+++rd+ky++g+r+nr+t sgy Zjn_sc00150.1.g00130.1.am.mk 115 MPGFRFHPTEEELIDFYLRRRVEGKRFNI-ELINLVDLYRYDPWDLPALASIGDKEWFFYVPRDRKYRNGDRPNRVTPSGY 194 79***************************.89***************888889**************************** PP NAM 83 WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 Wkatg d+ v +++++ +glkktLvfy g+apkg +++W+m+eyrl Zjn_sc00150.1.g00130.1.am.mk 195 WKATGADRMVRVEGNRSIGLKKTLVFYVGKAPKGLRSSWIMNEYRL 240 ********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 55.246 | 114 | 260 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.31E-55 | 114 | 260 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-24 | 116 | 240 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 448 aa Download sequence Send to blast |
MNSRKIFTSC GQNSVPALVV VTAQLRFIGH RQALSLEVPA LPFASPLFQL NSGRSFLVAG 60 YVLQRKLGSW PRRWVMIQDR RGSMRGGDQH HHHDMATRGA GGGDDGQQPA HDMVMPGFRF 120 HPTEEELIDF YLRRRVEGKR FNIELINLVD LYRYDPWDLP ALASIGDKEW FFYVPRDRKY 180 RNGDRPNRVT PSGYWKATGA DRMVRVEGNR SIGLKKTLVF YVGKAPKGLR SSWIMNEYRL 240 PHGEADRYQK EISLCRVYKR PGIEDNFHLT GTAARSSSSK GAAAMDKKHR SSPRLAPVFD 300 GGHSSSALMN KPYSGAANNG LMSSTSAAAP AATMALQPSM FRSTAGSVAS LSSTTSTEED 360 GTSLYHLKCA NPLLPSSTHA LLNMNSTAMA TIPIDELSRA VGSYSDQLGN PNQQPLPSQG 420 PLLPFPSMEK IWDWNPLLEF PKVCSSFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-52 | 116 | 260 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-52 | 116 | 260 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-52 | 116 | 260 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-52 | 116 | 260 | 19 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 5e-52 | 116 | 260 | 19 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-52 | 116 | 260 | 19 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004973013.1 | 0.0 | NAC domain-containing protein 35 | ||||
TrEMBL | A0A1E5V4Y2 | 0.0 | A0A1E5V4Y2_9POAL; NAC domain-containing protein 35 | ||||
STRING | Pavir.J38855.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7706 | 36 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 5e-94 | NAC domain containing protein 35 |