PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00132.1.g00550.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 271aa    MW: 27883.7 Da    PI: 8.3419
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00132.1.g00550.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer69.27e-224996759
                   ZF-HD_dimer  7 keClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                                   eCl+Nh a+ Ggh+vDGCgEf+p+      aa+l CaACg HR+FHRr  ++
  Zjn_sc00132.1.g00550.1.sm.mk 49 LECLQNHTANAGGHVVDGCGEFLPA-----PAASLSCAACGSHRSFHRRAIAS 96
                                  69**********************9.....5789***************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5152320.5124893IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-65092IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.4E-195093IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.1E-185093IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.9E-15164204IPR009057Homeodomain-like
SuperFamilySSF466893.23E-6166204IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEALVDVKYR LALFRHGGVA DAKNKLGLPA AATAGGGAIE SAAAGVYCLE CLQNHTANAG  60
GHVVDGCGEF LPAPAASLSC AACGSHRSFH RRAIASHSAV VPPPRLLRDG WESESDYDDG  120
RPMSPLPVQA LARPFGCSLA PATCRPPVPA VQQGPVAVAP GASLSERLGW RLQKREDAAV  180
EDCCREIGVT RGVFKVWMHN NKHNYVGGLH SARRAAASSA SSARVPPFHS AAAAASAPAP  240
PAVHADLKII GSVENYVVQL ATVSGGAPPS A
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572241.19e-44zinc-finger homeodomain protein 9
TrEMBLA0A317YFZ64e-45A0A317YFZ6_MAIZE; Zinc-finger homeodomain protein 9
TrEMBLB6TGF54e-45B6TGF5_MAIZE; ZF-HD homeobox protein
STRINGBRADI3G37040.13e-43(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3601833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.11e-19homeobox protein 21