PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00123.1.g00210.1.es.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 297aa MW: 33726.8 Da PI: 6.1393

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00123.1.g00210.1.es.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	67.4	2.8e-21	11	93	3	85
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83 ++++ lP + + +i+k++lP + ++++da++++ e +efi +++se+++ c re++kti+++ +l al++lGf +y++++ Zjn_sc00123.1.g00210.1.es.mkhc 11 KENASLPRSTMFKIIKEMLPPDVRVARDAQDLLVESCVEFINLLSSESNEVCSREEKKTIAPEHVLKALSDLGFREYIDEV 91 67899**************************************************************************98 PP NF-YB 84 kv 85 + Zjn_sc00123.1.g00210.1.es.mkhc 92 YA 93 65 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.7E-35	8	140	IPR009072	Histone-fold
SuperFamily	SSF47113	7.29E-33	13	140	IPR009072	Histone-fold
Pfam	PF00808	1.6E-18	14	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence Send to blast
MDPMDIVGKS KENASLPRST MFKIIKEMLP PDVRVARDAQ DLLVESCVEF INLLSSESNE 60 VCSREEKKTI APEHVLKALS DLGFREYIDE VYAAYEQHKL ETLDSPKASK FTGVEMTEEE 120 AAAEQQRMFA EARARMNNGA AKPKELEQEP QQQPQQPPQI QLQMQAPQHH PMQPQLQLHP 180 SLQQSVQPQL QFHQPPQHSF QPQAQVHAQP QHPPHLQQHS QLEPSQPQLQ PHMQPQQSPQ 240 GQQNPLPDQH SQAQIQLHPQ PQQPPQVQSQ QTPQVQLQRQ PQSQVLPQVK TGPGTNN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	2e-30	12	133	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235094.1	1e-101	nuclear transcription factor Y subunit beta
TrEMBL	I1I6Q3	1e-99	I1I6Q3_BRADI; Uncharacterized protein
STRING	BRADI3G34930.1	1e-100	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5720	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.4	5e-61	nuclear factor Y, subunit B13