PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00123.1.g00140.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 231aa    MW: 26428.8 Da    PI: 7.8704
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00123.1.g00140.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB60.53.7e-193731585
                           NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85
                                    +i+k++lP + ++++d+++++ e  +efi +++se+++ c re++kti+++ ll al++lGf +y++++ +
  Zjn_sc00123.1.g00140.1.sm.mkhc  3 KIIKEMLPPDVRVARDTQDLLVESCVEFINLLSSESNEVCSREEKKTIAPEHLLKALSDLGFREYIDEVYA 73
                                    89*****************************************************************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.86E-252112IPR009072Histone-fold
PfamPF008082.0E-15359IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.9E-273108IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MFKIIKEMLP PDVRVARDTQ DLLVESCVEF INLLSSESNE VCSREEKKTI APEHLLKALS  60
DLGFREYIDE VYAAYEQHKL ETMDSPKAGK FIGVEMTEEE AAAEQQRMIH NIILCSHSNS  120
YIHHRNNPSN LNCSSISHHS IPSSLKRRCM HNHNTPHTFS NNPNWNPHSL NCSGICNHSS  180
PHKCSRIPYQ ANTHKLKFGC IRNHSSPLTC NHSRHHTCSC NVSHNLRCCH R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-21310823128Transcription Regulator NC2 beta chain
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57203549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.46e-50nuclear factor Y, subunit B13