PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00106.1.g01580.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 496aa MW: 51443.1 Da PI: 10.5414 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7.3e-18 | 279 | 333 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le+ F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Zjn_sc00106.1.g01580.1.am.mk 279 RKKLRLSKEQSAFLEDSFKEHSTLNPKQKAALARQLNLRPRQVEVWFQNRRARTK 333 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 127.7 | 5e-41 | 279 | 369 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rlskeq+++LE+sF+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ Zjn_sc00106.1.g01580.1.am.mk 279 RKKLRLSKEQSAFLEDSFKEHSTLNPKQKAALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTAENRRLH 359 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLreelk 92 ke +eLr +lk Zjn_sc00106.1.g01580.1.am.mk 360 KELAELR-ALK 369 ******9.565 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-18 | 263 | 329 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.55E-18 | 267 | 336 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 275 | 335 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.0E-16 | 277 | 339 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.64E-16 | 279 | 336 | No hit | No description |
Pfam | PF00046 | 2.9E-15 | 279 | 333 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 310 | 333 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 9.5E-11 | 335 | 369 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.9E-25 | 335 | 378 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MIRSSPACSL LPGHSRALVK PLSLGSKRHS LATPTSYLQL SPSSVPSSPS TVSRCLVILG 60 RGMELGLSLG KAAVAEAGTA APELGLGLGV GAGAARRVEG GNATAAAAVG GRWWAAAPAA 120 SPEPAVRLSL GLQWPPSGTG ECRAIKRVVV DFPYLSLRFG LASACTSNGT VTDPGAGVVP 180 PRHAGSSDAP RRGFDVNRAP SVSVSAAAGA AGLVDEDDDD GEGNRAAALS SSPNDSGGSF 240 PLDLGRRVHA EGAAQGGGGC GGERSSSRAS DEDEGASARK KLRLSKEQSA FLEDSFKEHS 300 TLNPKQKAAL ARQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCET LTAENRRLHK 360 ELAELRALKT AQPFYMHLPA TTLSMCPSCE RVASNPVAAA AASSSAPAPS ASPVTPATSS 420 GAASLPAPPR EHRPSSFAAL FAATHSFPLA SQPRPPAPAS NLRVPVAGSR ENFWGFRGRP 480 LPSRSRLGSG KWRLLG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 327 | 335 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241196 | 0.0 | AK241196.1 Oryza sativa Japonica Group cDNA, clone: J065121H01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012702116.1 | 1e-139 | homeobox-leucine zipper protein HOX27 | ||||
Swissprot | Q6YPD0 | 1e-118 | HOX27_ORYSJ; Homeobox-leucine zipper protein HOX27 | ||||
TrEMBL | A0A317Y662 | 1e-138 | A0A317Y662_MAIZE; Homeobox-leucine zipper protein HOX27 | ||||
STRING | Si014954m | 1e-138 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5209 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 2e-67 | homeobox from Arabidopsis thaliana |