PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00101.1.g00290.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 424aa    MW: 46143.9 Da    PI: 5.1221
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00101.1.g00290.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.61e-086088125
                                    --S---SGGGGTS....--TTTTT-SS-S CS
                         zf-CCCH  1 yktelCrffartG....tCkyGdrCkFaH 25
                                    +kt+lC++f+r G     C++G++C++aH
  Zjn_sc00101.1.g00290.1.sm.mkhc 60 WKTSLCSYFRRHGaaaqGCSHGESCRYAH 88
                                    8**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5168715.9641424IPR010280(Uracil-5)-methyltransferase family
Gene3DG3DSA:4.10.1000.101.0E-125596IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.73E-65795IPR000571Zinc finger, CCCH-type
SMARTSM003560.00115990IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0375991IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-66088IPR000571Zinc finger, CCCH-type
SuperFamilySSF533352.37E-21254424IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene3DG3DSA:3.40.50.1501.4E-39256364IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF138471.8E-7278333IPR025714Methyltransferase domain
CDDcd024404.67E-5284333No hitNo description
Gene3DG3DSA:3.40.50.1501.4E-39399424IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006396Biological ProcessRNA processing
GO:0008173Molecular FunctionRNA methyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEEAKAQPPP PPPQQQPELA GEKRKRDDED SPDASPEEAP AASTGGDDAP SAGGARHPMW  60
KTSLCSYFRR HGAAAQGCSH GESCRYAHTE EELRPRPDGT WDPTSDRAKK LRKDAEEAQE  120
EEVVTLDEQS LDKCLVGLPR GWTADRLKAF LKDQASVTSV QGGLPCILEG ILESPVVNGY  180
RNNNNDRNVR EGRSPSQSDA SQNAESQISE VMLIVQVCST GVDEALMKEE FDKLSAALQL  240
GAATCSPPLP LTTIVVQVNT LAAERLYALA GDWANLNSDT LLFDVCCGTG TIGLTLAHRV  300
GMVVGIEMNE SAVLDAHRNA VINGIKNYRF VCAKTLHVLV FTQLYISCNP ESLVANAIEL  360
CTPTAEKQEK NKGNRGWRSM SSAGLARQRT KSMPSSEPFV PKRAMAVDLF PHTSHCEMVM  420
LFER
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269831e-67KJ726983.1 Zea mays clone pUT3684 C3H transcription factor (C3H10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002446006.13e-67zinc finger CCCH domain-containing protein 24
SwissprotQ8L7S31e-42C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A3L6FTM34e-91A0A3L6FTM3_MAIZE; Zinc finger CCCH domain-containing protein 24
STRINGSb06g000450.11e-66(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84933131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28450.21e-43C3H family protein
Publications ? help Back to Top
  1. Wang Y, et al.
    Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis.
    BMC Plant Biol., 2017. 17(1): p. 261
    [PMID:29268705]