PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00094.1.g00080.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 816aa MW: 86176.9 Da PI: 8.4069 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.6 | 6.9e-11 | 394 | 436 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++P + K++ a+iL A+eY+k+L Zjn_sc00094.1.g00080.1.am.mk 394 MAERRRRKKLNDRLYMLRSVVPRiS------KMDRASILGDAIEYLKEL 436 79*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 387 | 436 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-17 | 390 | 463 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-14 | 393 | 442 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-8 | 393 | 436 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-16 | 394 | 448 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.60E-12 | 394 | 441 | No hit | No description |
CDD | cd04873 | 2.55E-4 | 505 | 549 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 816 aa Download sequence Send to blast |
MGSSVISNVL ALSLACQPVQ IQALAALACQ RELRHRSALR LRPLLPRRPP PEESEQASCR 60 VAMLSRLGNP LWMQEDDGQD QGQEQQHAPP PAMGVIPAQG QEDQNLLALA AAAAGSVGFR 120 APGMLDDDWY FDGMAANAGT GTGAQGSMFL APQAQAGGSV TCAGSQMFSL FNMGNAGPFD 180 LHGFDLGLAG GGSSGGELSS IAGNASNSSS LSLIPAGNAG LLGSFGGFGT APAPIQEFGG 240 LGGFDVFDNG AGSSAAPPPA SASLTAPFAA RGKAAVLRPL EIFPPVGAQP TLFQKRALRR 300 NAGEEEDDKK RKAAAAVAVG ASSGGGDSLL LDDGDDDGLS IDASGLNYDS EDGKGVEESD 360 KKNGKDSNAN STVTAGGTGD GKGKKKGLPA KNLMAERRRR KKLNDRLYML RSVVPRISKM 420 DRASILGDAI EYLKELMQKI SDLQNELESP PCTASPLPPT PTSFRPLTPT LPSLPSRVKE 480 ELCPNALPSP TQQPSVEVRI REGRVVNIHM FCARRPGLLL SAMRAIEGLG LDVQQAVISC 540 FNGFSLDVFK AELCKEGPGL LPEEIKAVLL QSAGWSRRGF TATRHCLAAL DLAAGIPVKS 600 GRNDLVGNGR CRCYSERLVL PAASRTPFRR THGAPGTESR SMGSSRPARR RRRSCDGSRS 660 QSGWRRTLTL NPNHEPVRVR ARSAALLPVG ELRDPRIDGA HSLPVCSYVV IAPVLPVLFT 720 RKREPISIAR MVACHGGFCE SRQCAITPPV LQGKAGSAWL ELDLPPNGRC SFGSYCGWAQ 780 EASAFGHEPL SVELEGMSSD LEFRVPGFIR WTSSLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-14 | 389 | 446 | 6 | 63 | Transcription factor MYC2 |
5gnj_B | 1e-14 | 389 | 446 | 6 | 63 | Transcription factor MYC2 |
5gnj_E | 1e-14 | 389 | 446 | 6 | 63 | Transcription factor MYC2 |
5gnj_F | 1e-14 | 389 | 446 | 6 | 63 | Transcription factor MYC2 |
5gnj_G | 1e-14 | 389 | 446 | 6 | 63 | Transcription factor MYC2 |
5gnj_I | 1e-14 | 389 | 446 | 6 | 63 | Transcription factor MYC2 |
5gnj_M | 1e-14 | 389 | 446 | 6 | 63 | Transcription factor MYC2 |
5gnj_N | 1e-14 | 389 | 446 | 6 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 383 | 401 | KKKGLPAKNLMAERRRRKK |
2 | 395 | 402 | ERRRRKKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020167620.1 | 0.0 | transcription factor ICE1-like | ||||
TrEMBL | A0A482KF71 | 0.0 | A0A482KF71_9POAL; ICE1 | ||||
STRING | Sb05g019530.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1646 | 37 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26744.4 | 2e-80 | bHLH family protein |