PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00088.1.g00480.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 397aa MW: 42098 Da PI: 7.7976 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.1 | 4.3e-15 | 186 | 232 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++ErrRR++iN++f eL +++P + kK++Ka+iL Av+Y+++Lq Zjn_sc00088.1.g00480.1.sm.mk 186 DHIIAERRRREKINQRFIELSTVVPGL-----KKMDKATILGDAVKYVRELQ 232 5999***********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.05 | 182 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-19 | 186 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.93E-17 | 187 | 240 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.55E-15 | 187 | 236 | No hit | No description |
Pfam | PF00010 | 1.2E-12 | 187 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.5E-17 | 188 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 397 aa Download sequence Send to blast |
MDDSSMFLQW AMNQLHQHPA AAAAPGAPAY QNGGGGAGDR EAAYPSLQAL RNATQPAPQT 60 AAAAAVRVRD LTVQVDHRTN SNSWSSGDSP GAAMDYDTAT RWSPHTAHAS TIGLGGGSSN 120 SRPVSWNFSA ASAQPTTDDG GRSDDVALPD AATAARALHA STGRRGGSSG PAAATAASSS 180 PGPVQDHIIA ERRRREKINQ RFIELSTVVP GLKKMDKATI LGDAVKYVRE LQDKVKTLEK 240 DGVHGAGGTI QSTVLVKKPC RVPDDEGAAS NGGLQQLPEI EARLSDKSIL LRIHCDNERG 300 LLVKVLSEVE KMSLAITHTN VMPFPSSTTI ITITAKASHL HSYTHEYIIS SMPRRTEMEE 360 GFNTTVDDIT KGEMSPGIVL SGCRARTQGS RELTHLR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 4e-14 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_B | 4e-14 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_E | 4e-14 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_F | 4e-14 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_G | 4e-14 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_I | 4e-14 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_M | 4e-14 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
5gnj_N | 4e-14 | 186 | 241 | 8 | 63 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 190 | 195 | ERRRRE |
2 | 191 | 196 | RRRREK |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808672.1 | 1e-148 | transcription factor bHLH25-like | ||||
Refseq | XP_025808673.1 | 1e-148 | transcription factor bHLH25-like | ||||
Refseq | XP_025808674.1 | 1e-148 | transcription factor bHLH25-like | ||||
Refseq | XP_025808675.1 | 1e-148 | transcription factor bHLH25-like | ||||
TrEMBL | A0A2T7EJP4 | 1e-148 | A0A2T7EJP4_9POAL; Uncharacterized protein | ||||
STRING | Sb08g022760.1 | 1e-141 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37850.1 | 7e-38 | bHLH family protein |