PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00087.1.g00870.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 628aa    MW: 68083.5 Da    PI: 7.7754
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00087.1.g00870.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09383425754
                                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   + ErrRR+++N++++ Lr+ +P  +      K++ a+i   A+e++k+L
  Zjn_sc00087.1.g00870.1.am.mk 383 MSERRRRKKLNDRLFMLRSAVPRiS------KMDRASIISDAIEHLKEL 425
                                   78*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.96E-12374428No hitNo description
SuperFamilySSF474599.16E-15376452IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.424376425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-11382431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-14383438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7383425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MHRTRNVQFW TYGELRYICS ALRLCHLLLR QPPPPQERDP ASGRVPMLWQ LDNPSWMQDE  60
CQEQGQQQQH APPPTTGPGM ILAQGQEEQN LMAQAAATAG NMRFRTHGML DNDWYLDGMA  120
AGAGAGASAA AGTQLSLLPA QPAQAGGSTF TSAGSQMFSP FNMGTAGPFD LHEFDIGLSD  180
RGGNDGDLSS IVGNASNSSS LSLIPSGNAG SLGSFGGLAT APMQMQELSS FGGFDVFNNG  240
PGSSSMPPPA SASLTTPLAA RSKAVLLRPL EIIPPVDAQP LLFEKRAVRR NTGEEEHDKK  300
HKAAVSVGVS SGDDTLLLDD GGDDGLRIDA SRLNYDSEDI KGIEESDKKN TKDANANTNS  360
TVTAGCTGDS KCRKKSLQAK NLMSERRRRK KLNDRLFMLR SAVPRISKMD RASIISDAIE  420
HLKELTQKSS DLQNELASFP PTASPLPPTP TSFHPLTPMP PSLLSRMKEE LCPTTLPVPG  480
PTAQHPSIEV GITEGRVVNI HMFCARRRGL LMSAMSAIEG LGLDVQEAVF SCFNSFSMDI  540
FKAEVCFLLV PHCSFAGKAL DCCRRKSRPF CCTPPGFEAW PRKPRRLNHQ LQRTLKLPVF  600
LHFVCSRFGT CMLRFSPDPN YQSLVVSV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372390RKKSLQAKNLMSERRRRKK
2384391ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002449578.11e-149transcription factor SCREAM2
TrEMBLA0A482KF711e-170A0A482KF71_9POAL; ICE1
STRINGSb05g019530.11e-148(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.49e-64bHLH family protein