PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00075.1.g00720.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 273aa    MW: 29682.3 Da    PI: 10.4766
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00075.1.g00720.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.7e-1897145355
                           AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++GVr ++ +g+++AeIrd +     + kr +lg+f+taeeAa+ ++ a+ +l+g
  Zjn_sc00075.1.g00720.1.am.mk  97 FRGVRLRP-WGKYAAEIRDpW-----QrKRLWLGTFDTAEEAAAVYDDAAVRLKG 145
                                   8*******.**********77.....44***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.94496153IPR001471AP2/ERF domain
SMARTSM003802.4E-3496159IPR001471AP2/ERF domain
PfamPF008471.7E-997145IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-2197155IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-2897154IPR001471AP2/ERF domain
PRINTSPR003672.2E-997108IPR001471AP2/ERF domain
CDDcd000181.58E-1897155No hitNo description
PRINTSPR003672.2E-9119135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSSPSDSPAA GRSRRVSLPL PHPKRVRVSF VDADATDTDS SGDEDERGNR CVREVIEIDV  60
QAASVPAKRS RRALPPHVVL ARRHRAKAAG AGLRRPFRGV RLRPWGKYAA EIRDPWQRKR  120
LWLGTFDTAE EAAAVYDDAA VRLKGSNAVT NFPSSVAAAE APARSSRKER RPRGRLVRDA  180
ASEAHPSPQP PSPPQPQART GEAVPVRELA PPTSVLRYAD EGALPAFDFF YGGFGELAAA  240
APSKAAEFEW MPWWEGEEFV TSGVTTASAV TVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1995160470ATERF1
3gcc_A3e-1995160470ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241412e-56AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence.
GenBankAK1106132e-56AK110613.1 Oryza sativa Japonica Group cDNA clone:002-168-H06, full insert sequence.
GenBankAP0149612e-56AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126132e-56CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804895.14e-74ethylene-responsive transcription factor CRF4-like
TrEMBLA0A2T7EG762e-74A0A2T7EG76_9POAL; Uncharacterized protein
STRINGPavir.Ia04256.1.p8e-70(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.12e-16ERF domain protein 12