PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00067.1.g02160.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 342aa MW: 37984.9 Da PI: 10.1187 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 390 | 3.5e-119 | 16 | 342 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye........paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkala 68 md+ g+re r+++ +y+ p+++lk++ +++++++++e+d++irer++al+ekkaa+aerd+af+qrd+a+a Zjn_sc00067.1.g02160.1.sm.mkhc 16 MDNFGHREngRQRPdQYKamhtqwmmPQRQLKDHHSMNMLALMNEKDSAIRERDHALAEKKAAIAERDVAFAQRDAAMA 94 99****9999****99*99***9999889************************************************** PP GAGA_bind 69 ernkalverdnkllalllvensla...salpvgvqvlsgtksidslqqlse.....pqledsave.lreeeklealpie 138 ern+a+verdn+l+al+lv+ + + +++ ++ lsgtk++++++qls+ ql+d +++ +re++++ea+pi+ Zjn_sc00067.1.g02160.1.sm.mkhc 95 ERNAAIVERDNALAALELVRMNGYntnNGNGFHQGPLSGTKNTHHHDQLSHvqsssLQLADAPYDhAREMHISEAYPIS 173 ****************9988766555588899999*************999899999********9************* PP GAGA_bind 139 eaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvP 211 +a+ ++ + kk++k++++ +p+++ + +k++++++k+ +sa e+ sk+e+k++dl+ln+vs+Dest+P+P Zjn_sc00067.1.g02160.1.sm.mkhc 174 TAPGSVGKGKKPRKNHSQPSPLKRPSGVLRKTKKTNWKNGGLSSAGEDsarasvSKNEWKDQDLGLNQVSYDESTMPAP 252 **************************98888777888887766665334678889************************ PP GAGA_bind 212 vCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWA 290 +CsCtG+lrqCYkWGnGGWqS+CCt++iS+yPLP++++rr+aR++grKmS+gaf+klL++LaaeG+dls+pvDLkdhWA Zjn_sc00067.1.g02160.1.sm.mkhc 253 ACSCTGKLRQCYKWGNGGWQSSCCTMSISMYPLPAMPNRRHARMGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWA 331 ******************************************************************************* PP GAGA_bind 291 kHGtnkfvtir 301 kHGtn+++tir Zjn_sc00067.1.g02160.1.sm.mkhc 332 KHGTNRYITIR 342 **********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06217 | 1.7E-96 | 16 | 342 | IPR010409 | GAGA-binding transcriptional activator |
SMART | SM01226 | 7.8E-158 | 16 | 342 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
VIPSGLISWV QADVIMDNFG HRENGRQRPD QYKAMHTQWM MPQRQLKDHH SMNMLALMNE 60 KDSAIRERDH ALAEKKAAIA ERDVAFAQRD AAMAERNAAI VERDNALAAL ELVRMNGYNT 120 NNGNGFHQGP LSGTKNTHHH DQLSHVQSSS LQLADAPYDH AREMHISEAY PISTAPGSVG 180 KGKKPRKNHS QPSPLKRPSG VLRKTKKTNW KNGGLSSAGE DSARASVSKN EWKDQDLGLN 240 QVSYDESTMP APACSCTGKL RQCYKWGNGG WQSSCCTMSI SMYPLPAMPN RRHARMGGRK 300 MSGGAFTKLL SRLAAEGHDL STPVDLKDHW AKHGTNRYIT IR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00540 | DAP | Transfer from AT5G42520 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141822.1 | 0.0 | BBR/BPC transcription factor | ||||
Refseq | XP_008658294.1 | 0.0 | BBR/BPC transcription factor isoform X1 | ||||
Swissprot | Q5VSA8 | 0.0 | BBRD_ORYSJ; Barley B recombinant-like protein D | ||||
TrEMBL | A0A1D6NW48 | 0.0 | A0A1D6NW48_MAIZE; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | A0A3L6DC17 | 0.0 | A0A3L6DC17_MAIZE; Barley B recombinant-like protein D | ||||
STRING | GRMZM2G118690_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6226 | 37 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.1 | 9e-99 | basic pentacysteine 6 |
Publications ? help Back to Top | |||
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