PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00066.1.g02080.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 395aa MW: 40157.7 Da PI: 5.2103

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00066.1.g02080.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8e-12	213	258	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Zjn_sc00066.1.g02080.1.sm.mk 213 HSIAERLRRERIAERMKALQELVPNA-----NKIDKASMLDEIIDYVKFLQ 258 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.30E-13	206	262	No hit	No description
SuperFamily	SSF47459	7.2E-17	206	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.111	208	257	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-16	210	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-9	213	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-13	214	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MQPVGEMQGD GGGGGGQDDF FNQMLSTLPT AWTELGSGKS PWELPAGASE DLAFDESALL 60 ASRLRHHQIG GGEDKPVMLH LSDLHGLAGV GGGEDGGNAG FLPLPLFADR TREDIDAAAA 120 AFKSPNAVGQ GGDRALYNGF GAAGMHGTSA VQPPPPFGQG GPMPAQSFGG GVASGGGTTP 180 AGAPATGASS GGGAAPPRQQ RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK 240 IDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GASAVAPLVA NMSSEGNVNG NRSENGCSSS 300 SLRLTEQQVA KLMEEDTGSA MQYLQGKGLC LMPISLASAI SATSSSILSR PTVHPTGGAG 360 GTLHDGGSPA SPPLGNGACG DDSQTVKDGD AVDRQ

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MQPVGEMQGD GGGGGGQDDF FNQMLSTLPT AWTELGSGKS PWELPAGASE DLAFDESALL  60
ASRLRHHQIG GGEDKPVMLH LSDLHGLAGV GGGEDGGNAG FLPLPLFADR TREDIDAAAA  120
AFKSPNAVGQ GGDRALYNGF GAAGMHGTSA VQPPPPFGQG GPMPAQSFGG GVASGGGTTP  180
AGAPATGASS GGGAAPPRQQ RVRARRGQAT DPHSIAERLR RERIAERMKA LQELVPNANK  240
IDKASMLDEI IDYVKFLQLQ VKVLSMSRLG GASAVAPLVA NMSSEGNVNG NRSENGCSSS  300
SLRLTEQQVA KLMEEDTGSA MQYLQGKGLC LMPISLASAI SATSSSILSR PTVHPTGGAG  360
GTLHDGGSPA SPPLGNGACG DDSQTVKDGD AVDRQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	222	RLRRER

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU969779	2e-72	EU969779.1 Zea mays clone 335593 BHLH transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151181.1	1e-159	uncharacterized protein LOC100284814
Swissprot	Q9ZUG9	6e-70	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A1D6HN74	1e-162	A0A1D6HN74_MAIZE; Transcription factor bHLH69
STRING	Pavir.Ab03158.1.p	1e-148	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1419	37	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58010.1	3e-47	LJRHL1-like 3

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]