PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00066.1.g01470.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 110aa MW: 12302.5 Da PI: 4.313 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.7 | 1.3e-05 | 87 | 103 | 39 | 55 |
TCHHHHHHHHHHHHHHH CS HLH 39 sKaeiLekAveYIksLq 55 +Ka++Le A+eY+k+Lq Zjn_sc00066.1.g01470.1.sm.mk 87 DKASMLEDAIEYLKQLQ 103 8***************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.9E-4 | 86 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MDGQQLDLIM RHKSMANICE SEDALGSSES EHARPARPRG KRSRAAEVHN LSEKEMLIDP 60 DAHEIGAEEE EQDKREDEGA ADAFLTDKAS MLEDAIEYLK QLQLQVQGPN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT037069 | 2e-54 | BT037069.1 Zea mays full-length cDNA clone ZM_BFb0153L05 mRNA, complete cds. | |||
GenBank | EU957773 | 2e-54 | EU957773.1 Zea mays clone 1615677 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804956.1 | 1e-36 | transcription factor EC-like isoform X1 | ||||
Refseq | XP_025804964.1 | 1e-36 | uncharacterized protein LOC112883903 isoform X2 | ||||
TrEMBL | A0A2T8KY92 | 2e-35 | A0A2T8KY92_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A368PTP7 | 2e-35 | A0A368PTP7_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J11618.1.p | 4e-36 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3336 | 37 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 6e-09 | bHLH family protein |