PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00063.1.g00830.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 569aa MW: 59966.6 Da PI: 8.173

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00063.1.g00830.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6e-05	480	517	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +++eYIk L Zjn_sc00063.1.g00830.1.am.mk 480 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 517 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.992	468	517	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.54E-5	478	521	No hit	No description
SuperFamily	SSF47459	4.06E-10	478	526	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.2E-8	482	522	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MGFGLVREAQ RLLTRTFCQS HHGTLADFAR RVRGSCVYAR TRECADRFFQ AREHRRPGQG 60 PRGASDVTRL APVASPVAKA ISSSSPRHAA GLLLSSLDEN TSSGPDRDPG DPKLIKLDPI 120 PTCPPYRIAS QPSTSTPHSL PATDLGRMPS PPSVVDANAT TPANSTTKAG SYRASYIGRD 180 MADHQEMIHA AAAAAATGTS SHGHGVDWWS AAVSCSPAGW SAPADGNSSR SGNAASSESP 240 RSSSFAAGVS SVTFQEPAGV IQRPAAVAVP QPVAGTFTGA WSQPYYLDGS DFHGYMSARN 300 DQGHMNAPSL TSPSSSNNPM MAQEPHDPNH QFLSNLGLEL LSSPTSSSGG FRSSSLLRSL 360 TEPAASAKPL AGFQQYHLQQ QTMMNQAPGS VREALQFSNN TPFWNPALGF SAPEAAESLG 420 TASQSLAQSR PASSLEDKSA LEVAGDSSSN IAKKANTDPT PRIKKARTGT PSPLPTFKVR 480 KEKLGDRITA LQQLVSPFGK TDTASVLHET IEYIKFLHEQ VGMSTDSSEA ATMGDLSGRG 540 LCLVPISSTF AVASETPVDF WTPFGAAFR

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MGFGLVREAQ RLLTRTFCQS HHGTLADFAR RVRGSCVYAR TRECADRFFQ AREHRRPGQG  60
PRGASDVTRL APVASPVAKA ISSSSPRHAA GLLLSSLDEN TSSGPDRDPG DPKLIKLDPI  120
PTCPPYRIAS QPSTSTPHSL PATDLGRMPS PPSVVDANAT TPANSTTKAG SYRASYIGRD  180
MADHQEMIHA AAAAAATGTS SHGHGVDWWS AAVSCSPAGW SAPADGNSSR SGNAASSESP  240
RSSSFAAGVS SVTFQEPAGV IQRPAAVAVP QPVAGTFTGA WSQPYYLDGS DFHGYMSARN  300
DQGHMNAPSL TSPSSSNNPM MAQEPHDPNH QFLSNLGLEL LSSPTSSSGG FRSSSLLRSL  360
TEPAASAKPL AGFQQYHLQQ QTMMNQAPGS VREALQFSNN TPFWNPALGF SAPEAAESLG  420
TASQSLAQSR PASSLEDKSA LEVAGDSSSN IAKKANTDPT PRIKKARTGT PSPLPTFKVR  480
KEKLGDRITA LQQLVSPFGK TDTASVLHET IEYIKFLHEQ VGMSTDSSEA ATMGDLSGRG  540
LCLVPISSTF AVASETPVDF WTPFGAAFR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT061283	2e-54	BT061283.1 Zea mays full-length cDNA clone ZM_BFb0131G07 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972712.1	1e-166	transcription factor bHLH112
TrEMBL	A0A368RHX5	1e-165	A0A368RHX5_SETIT; Uncharacterized protein
TrEMBL	A0A3L6PM30	1e-165	A0A3L6PM30_PANMI; Uncharacterized protein
STRING	Pavir.Fa02016.1.p	1e-165	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	8e-39	bHLH family protein