PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00059.1.g01850.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 444aa    MW: 48146.2 Da    PI: 5.5675
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00059.1.g01850.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.2e-30200258259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                   +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+++Hnh+
  Zjn_sc00059.1.g01850.1.am.mk 200 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPSMLVITYTSDHNHP 258
                                   699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.742194260IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-31194260IPR003657WRKY domain
SuperFamilySSF1182904.84E-26197260IPR003657WRKY domain
SMARTSM007746.3E-37199259IPR003657WRKY domain
PfamPF031061.5E-25201258IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MCDFFWPSLA DEGDLADVVR ASLQQLPAAA TPASATELVS ADAHGHLPAE EVEGFLPTHG  60
VSCRGNHDHG DEVHLQPQWQ LVHGNGMGVT VGSSGGGSCD PLLLHSSPSY PLLEPQQTEG  120
LIRHVMSGPT PQLLGVGEGD CDMAALEMDE QGLDMAMDPH APAIKRRKSQ TKKVVCIPAP  180
TAAPPVVGGR PSTSGEVVPS DLWAWRKYGQ KPIKGSPYPR GYYRCSSSKG CSARKQVERS  240
RTDPSMLVIT YTSDHNHPWP TQRNVLAGST STRPAAAAKS QHSTAATVPP PPTRHHHTIG  300
TVGDSASSSS TGDNNVHQQQ VPKQEVLDVM DHPMPEQSAA AVHDLDMFAE ADGALNIMQT  360
FNFNPQQQQL ATAADGDDDD LLQDDKQQLL DPFSFNFFDW RRAEGVVLPA GDGVGEQGRW  420
NSRDNWWRQS LADNDEHDHR HIHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23168261280Disease resistance protein RRS1
5w3x_D2e-23168261280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0187272e-72AC018727.10 Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence.
GenBankAP0149662e-72AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBankCP0126182e-72CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankKC9546102e-72KC954610.1 Oryza sativa Japonica Group cultivar Dongjin WRKY2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008658838.11e-103probable WRKY transcription factor 35
TrEMBLA0A1E5W3V01e-106A0A1E5W3V0_9POAL; Putative WRKY transcription factor 35
STRINGGRMZM2G383594_P011e-103(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118473039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-49WRKY DNA-binding protein 35