PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00057.1.g01360.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family E2F/DP
Protein Properties Length: 413aa    MW: 44580 Da    PI: 5.0418
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00057.1.g01360.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP64.91.1e-20190245763
                         E2F_TDP   7 rlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliek....ke 63 
                                     +llt+kf++ll+ +e+g+++ln++a +L   +v  ++RRiYDi+NVLe++nliek    ++
  Zjn_sc00057.1.g01360.1.sm.mkhc 190 GLLTKKFINLLQGVEDGTIDLNKAAATL---EV--QKRRIYDITNVLEGINLIEKgfdmSK 245
                                     589*************************...99..********************777433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013722.0E-17188248IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-18190239IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.4E-17190239IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467855.98E-11191239IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MDGGSSSLPI SPPPPPQVYL RGPAPPPGPA PPPKVHFFRS PATTPVFTAR RPGPRAAPKP  60
PMPPPAALAP PRPQQPPPTT AAKERLPPRQ PQPSPAAGAM RPPQQPSAAG AMLPPPAPQD  120
AAKGQQKATP PCNEENNGRE ISKAEIKTEE TEEGHDKAST TAPVKIIKRP KKGKASKHAL  180
NASDGGAIEG LLTKKFINLL QGVEDGTIDL NKAAATLEVQ KRRIYDITNV LEGINLIEKG  240
FDMSKPKEIE CQISALKEEL ESLYEEDDRL ENEIREAQEK LEALVLDEDK RKSRTSDSQD  300
LFNQYHQAMP DNSEPVVTAG SGQALQHMDC DPNQSVEQMD CDPTEAVQQM DCDPSRALKK  360
GESNAACTHT KAPSREHETM SGILRIVPSD SNADADYWFA SDLDVGVTDT WGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-121902391363PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0647376e-45BT064737.1 Zea mays full-length cDNA clone ZM_BFb0090H09 mRNA, complete cds.
GenBankEU9714996e-45EU971499.1 Zea mays clone 366261 E2F-related protein mRNA, complete cds.
GenBankKJ7268786e-45KJ726878.1 Zea mays clone pUT3419 E2F-DP transcription factor (E2F5) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975004.11e-106transcription factor E2FC
TrEMBLA0A3L6Q6V51e-112A0A3L6Q6V5_PANMI; Transcription factor E2FC-like
STRINGGRMZM2G050590_P012e-94(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62537148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.12e-34E2F/DP family protein