PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00051.1.g01180.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 366aa    MW: 41329.1 Da    PI: 4.7924
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00051.1.g01180.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.43.6e-36481382101
                                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS
                    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 
                                     Fl+k+y++++d+++++++sws+++nsfvv+d++ fa+ +Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++         we
  Zjn_sc00051.1.g01180.1.sm.mkhc  48 FLTKTYDMVDDPTTDHVVSWSATNNSFVVWDPHAFATVMLPRHFKHNNFSSFVRQLNTYGFRKVDPDR---------WE 117
                                     9********************999*****************************************999.........** PP

                                     EEESXXXXXXXXXXXXXXXXX CS
                    HSF_DNA-bind  81 FkhksFkkgkkellekikrkk 101
                                     F+++ F +g+++ll++i+r+k
  Zjn_sc00051.1.g01180.1.sm.mkhc 118 FANEGFLRGQRHLLKNIRRRK 138
                                     *******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467858.3E-3744137IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.9E-4044137IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-6344137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-194871IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3248137IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-198698IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434087111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-1999111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDPMPNPVKE EVSHGEGGLL GAAAGDGHGS VAAPRPMEGL QDGGPPPFLT KTYDMVDDPT  60
TDHVVSWSAT NNSFVVWDPH AFATVMLPRH FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN  120
EGFLRGQRHL LKNIRRRKPP AHNSPNQQSV SPYLEVGHFG YDAEIDRLKR DKQLLMAEVV  180
KLRQEQQNTK ANLKAMEDRL QGTEQKQQQM MAFLARVMRN PEFLKQLMSQ NEMRKELQEA  240
ISKKRRRRID QGPEDDDLGA TSSLEQGSPL LFDPSEPADF LIDGIPTDIG NSVLDPEVLA  300
QPQNIDLGTS EPQQNVPQGD LNEDFWGELL NEGFAEENDN HVIEDDMNLL SEKMGYLNSD  360
SPTSRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-264613727129Heat shock factor protein 1
5d5v_B3e-264613727129Heat shock factor protein 1
5d5v_D3e-264613727129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242247KKRRRR
2243248KRRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799458.10.0heat stress transcription factor A-2b-like
SwissprotQ6VBB20.0HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A168T0380.0A0A168T038_9POAL; Heat stress transcription factor A2b
STRINGSi030256m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-112heat shock transcription factor A6B
Publications ? help Back to Top
  1. Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S
    Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern.
    J. Plant Physiol., 2013. 170(14): p. 1277-84
    [PMID:23664583]