PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00049.1.g03370.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 665aa    MW: 72412.6 Da    PI: 7.477
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00049.1.g03370.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.91.1e-201671156
                                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                                  r++ +++t+ q+++Le++F+++++p++++r+ L+++lgL+ rq+k+WFqNrR+++k
  Zjn_sc00049.1.g03370.1.am.mk 16 RKRYHRHTPRQIQQLEAMFKECPHPDENQRAALSRELGLEPRQIKFWFQNRRTQMK 71
                                  688899***********************************************998 PP
2START117.32.2e-3720935471205
                                   CT-TT-S....EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TT CS
                         START  71 qWdetla....kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesss 141
                                   +W e ++    ka t++v+ +g     + l  m+ el  ++p+vp R+f f+Ry++q ++g w+ivdvS+d +++     +
  Zjn_sc00049.1.g03370.1.am.mk 209 KWMEFFPgivsKAHTVDVLVNGmcgrnESLIMMYEELHIMTPVVPtREFCFLRYCKQIEQGLWAIVDVSTDGQREAHYGVP 289
                                   68888888888*************************************************************999988888 PP

                                   SEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                         START 142 vvRaellpSgiliepksnghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                                     R+++lpSg+li +++ng+skvtwveh++ +  lp   l+r lv sg+a+ga +wva+lqr c 
  Zjn_sc00049.1.g03370.1.am.mk 290 PSRSRRLPSGCLIADMANGYSKVTWVEHMEIEQMLPiNVLYRNLVLSGAAFGAHRWVAALQRACD 354
                                   89**********************************999***********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.72E-20976IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-221078IPR009057Homeodomain-like
PROSITE profilePS5007117.8641373IPR001356Homeobox domain
SMARTSM003899.6E-201477IPR001356Homeobox domain
CDDcd000861.94E-191574No hitNo description
PfamPF000463.5E-181671IPR001356Homeobox domain
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
SMARTSM002342.9E-17134355IPR002913START domain
PfamPF018526.2E-32207354IPR002913START domain
CDDcd088758.94E-71208353No hitNo description
SuperFamilySSF559612.61E-21209356No hitNo description
PROSITE profilePS5084832.542209358IPR002913START domain
Gene3DG3DSA:3.30.530.201.6E-5248336IPR023393START-like domain
SuperFamilySSF559619.34E-7375463No hitNo description
SuperFamilySSF559619.34E-7518650No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MDFGDEPEGS DSQRRRKRYH RHTPRQIQQL EAMFKECPHP DENQRAALSR ELGLEPRQIK  60
FWFQNRRTQM KAQHERADNC FLRAENDKIR CENITMSEAL KNVICPNCGG PPVAEDFFDE  120
QKLRMENARL KEELDRVSSI TSKYLGRPFT QMPPMPTMSA SSLDLSVGGM PGPAFGGPGL  180
DLDLLGGGSA GPGMCPSGLP CCFCLVQHKW MEFFPGIVSK AHTVDVLVNG MCGRNESLIM  240
MYEELHIMTP VVPTREFCFL RYCKQIEQGL WAIVDVSTDG QREAHYGVPP SRSRRLPSGC  300
LIADMANGYS KVTWVEHMEI EQMLPINVLY RNLVLSGAAF GAHRWVAALQ RACDRVASLA  360
ALGVPHHDPS GVTAEGKRGM MKLSQRMVSC FCASLTSSPL QLWTTLSGTT DVSVRVSTYR  420
SADLGQHSGV VLGAAASIWL PVPSEHVFAF VRDESTRSQV HVHTYRVRSR RLRHFINNAR  480
GGVDVVTTSS CRATSLTDVS LSSPLLPQWD VLAHGNQVQE VSHISSGSNA GNCISLLRGL  540
NSSQNSRLIL QESCTDASGS MVVYSPIDLL AANVVMSGED PSGIPLLPSG FAILPDGRPG  600
TGSGASSSAG PPLAPPPVSL VTVAFQIVVS SLPSSRLNEE SVSTINSLVT STVQNIRAAL  660
NCTGP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668130.0BT066813.2 Zea mays full-length cDNA clone ZM_BFb0073D09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438026.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLC5Z6D60.0C5Z6D6_SORBI; Uncharacterized protein
STRINGSb10g006820.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-118homeodomain GLABROUS 11