PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00045.1.g02530.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ARR-B
Protein Properties Length: 680aa    MW: 73934.8 Da    PI: 6.5155
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00045.1.g02530.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.46.7e-28264317155
                         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                     kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Zjn_sc00045.1.g02530.1.sm.mkhc 264 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 317
                                     79*******************.********************************8 PP
2Response_reg77.74.2e-26831911109
                                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEE CS
                    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivv 77 
                                     vl vdD+p+ ++ll+ +l++ +y +v+++ ++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i++
  Zjn_sc00045.1.g02530.1.sm.mkhc  83 VLAVDDDPTCLKLLEGLLRRCQY-HVTTTGQAATALKLLRENKdqFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 159
                                     799********************.***************888889*******************87754.558****** PP

                                     ESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                    Response_reg  78 tahgeeedalealkaGakdflsKpfdpeelvk 109
                                     + +ge +++ + +  Ga d+l Kp+ +e+l++
  Zjn_sc00045.1.g02530.1.sm.mkhc 160 SVNGETQTVMKGITHGACDYLLKPVRIEQLRT 191
                                     *****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.6E-18555675IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.0E-4180216No hitNo description
SuperFamilySSF521721.71E-3480201IPR011006CheY-like superfamily
SMARTSM004481.7E-3181193IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.94782197IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-2383192IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.81E-2684196No hitNo description
SuperFamilySSF466896.63E-20261321IPR009057Homeodomain-like
PROSITE profilePS5129411.34261320IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-29262322IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-24264317IPR006447Myb domain, plants
PfamPF002492.5E-6266316IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MDGKQHGKDS RNALANRLQR GSIAVWASGD PATLEFLDST AQAAVWVREG QAGKEMTVEE  60
VKKPLGNANG HAGKDQFPVG MRVLAVDDDP TCLKLLEGLL RRCQYHVTTT GQAATALKLL  120
RENKDQFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS VNGETQTVMK GITHGACDYL  180
LKPVRIEQLR TIWQHVVRRR SCDAKNHGNE NDDAGKKAMN AEGENGGANR NKRASRKCRD  240
QNGDDVDDSD ENSNENGDSS TQKKPRVVWS VELHRKFVAA VNQLGIDKAV PKKILDLMNV  300
ENITRENVAS HLQKYRLYLK RLSADASRQP NLSVALGGRN PAYINMGLEA FKNYNAYGRY  360
RPIPNTNHSQ PNNLLARMNS PSAFGTHGFL PSQQLQIGYT QNNLSTSVGN VGGMSNGNLI  420
RGANMSLQDS SKCFPTGPSG NSFSNISNAT TLAPANSMPS QSLEPSKQQH LGRMHSSSGS  480
ADPFNSFVGE SPLFPDLGRC NTNWPTVVSS SIQELGQQDS VSRATLRVNA PKIEPLASEI  540
PLLGNEIQSQ VASLTSNALS MSFNQDAVPF TYGSSTNTIK MLSTNIAVSN SGINTSSPNF  600
QIDNSVVPRQ TMDIGDAGGV PTMQVGRIDQ QAVSNQLNCN NELMGASGLQ RGLSGDLDDI  660
VDMFRPEHIE DGISFDWELV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-25260323164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022682995.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLK3YQT60.0K3YQT6_SETIT; Two-component response regulator
STRINGSi016630m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81473447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-108response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]