PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00044.1.g01350.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 375aa    MW: 39902.7 Da    PI: 8.4067
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00044.1.g01350.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB177.81e-5520115297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   r qdrflPianvsrimkk+lPan+kiskdaketvqecvsefisf+t+easdkcqrekr+t+ngddllwa++tlGfedyv+p
  Zjn_sc00044.1.g01350.1.am.mk  20 RGQDRFLPIANVSRIMKKALPANSKISKDAKETVQECVSEFISFITGEASDKCQREKRRTVNGDDLLWAMTTLGFEDYVDP 100
                                   679****************************************************************************** PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   lk+yl+++releg+k
  Zjn_sc00044.1.g01350.1.am.mk 101 LKLYLRRFRELEGDK 115
                                   *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.2E-4917126IPR009072Histone-fold
SuperFamilySSF471131.71E-3722119IPR009072Histone-fold
PfamPF008081.1E-262589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.2E-185371No hitNo description
PROSITE patternPS0068505672IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.2E-187290No hitNo description
PRINTSPR006154.2E-1891109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MPDSDNESGG PSTADLSSAR GQDRFLPIAN VSRIMKKALP ANSKISKDAK ETVQECVSEF  60
ISFITGEASD KCQREKRRTV NGDDLLWAMT TLGFEDYVDP LKLYLRRFRE LEGDKVATGV  120
ASSGSGSGSG PLQSKADTPS SAHNGAGSAV GYGMYGGGSG VMMMVGQPMY GSPPAGYPQP  180
PHHQAVMGAR GAYGHGGASP SGLGRQDRGR SLHRSVMHDF ATVIALAASG KRARKCVEDH  240
LNFAEKERGH ETLALGHLFA TTATSGGAKP TESTWTATAG QHHEIEFHIS DLMLCDGGLV  300
AVGANTEPCV PPNRRLTFAF AARWRCRETT CVTVGRRAFQ GQRGWREATC GDFTGAVRAR  360
LQHDGDGSRI ASPFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A5e-4418110597NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9563831e-134EU956383.1 Zea mays clone 1561739 nuclear transcription factor Y subunit B-3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958263.14e-87nuclear transcription factor Y subunit B-10
TrEMBLK3ZWT78e-86K3ZWT7_SETIT; Uncharacterized protein
STRINGSi031069m1e-86(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-66nuclear factor Y, subunit B3