PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00036.1.g04060.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 501aa    MW: 55048 Da    PI: 5.1589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00036.1.g04060.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.53.5e-06447469225
                                     -S---SGGGGTS--TTTTT-SS-S CS
                         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                                     k ++C++fa  G C  Gd C++ H
  Zjn_sc00036.1.g04060.1.am.mkhc 447 KSKPCKHFAT-GSCLKGDDCPYDH 469
                                     6789**9988.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.017416442IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.502416443IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5417441IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004445472IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6445471IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4446470IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-6447470IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEDTLVPPPL APSTSPIAAA VLTRRRSHLD SGSYRTLSRL FHCFHLHHSL SDGSPPPEAK  60
ITAANPTGVD SGDSPQVPKD ADFDRQPEAL ENEAEAAGSP SRRVTCSPAR DQPTVPNATN  120
NPGEAKAPQV ALDDMDVLLE SSCAEPCAVS EKPVIEARLV VEGEALKSAK ACLEGEDDKS  180
VEEAMGNNNE HLLLDAMMTN FAGLIDDIGV GPTLMPTQNC GVSEGELQNS KDSEEPKQLS  240
SGTEEEIPAS NSDHRHVDDG GFEEGEIEGE LQDLGAEESD SEPAHENADD EEPGGDSICA  300
GSGAIESCSQ EMRCRNAHLK PENKGTDDLV LDKDVNIRND GQLYDNRAQA VSYSEVLDWN  360
ETPLPNNKDT KPGKKRKRHL TEERKAKKTK NKRMNRAQKR IAEGVHKLRL QPVIKPRIVK  420
PCHFYNHGKC QQGDSCKFSH DFIPSTKSKP CKHFATGSCL KGDDCPYDHE LSKYPCHKYE  480
SGMCFRVSNY RRHFYNRCKE I
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817940.11e-165zinc finger CCCH domain-containing protein 7
RefseqXP_025817941.11e-165zinc finger CCCH domain-containing protein 7
RefseqXP_025817942.11e-165zinc finger CCCH domain-containing protein 7
TrEMBLA0A2T7DKP61e-165A0A2T7DKP6_9POAL; Uncharacterized protein
STRINGPavir.Eb02489.1.p1e-172(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743