PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00036.1.g02190.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 293aa MW: 32565.1 Da PI: 9.4775 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.8 | 2.5e-10 | 37 | 61 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C f++r+ tCkyG+ C+F H+ Zjn_sc00036.1.g02190.1.am.mkhc 37 GQKACAFYMRSRTCKYGEDCRFDHP 61 6789********************8 PP | |||||||
2 | zf-CCCH | 37.3 | 4.7e-12 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+++ +tG Ck+G++C+F H++ Zjn_sc00036.1.g02190.1.am.mkhc 90 ERVCSYYEKTGKCKFGASCRFDHPK 114 689********************96 PP | |||||||
3 | zf-CCCH | 36.5 | 7.9e-12 | 181 | 205 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tGtCky d+CkF+H+ Zjn_sc00036.1.g02190.1.am.mkhc 181 GETVCDFYMKTGTCKYTDKCKFHHP 205 6789********************8 PP | |||||||
4 | zf-CCCH | 38.7 | 1.7e-12 | 237 | 260 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C f++++GtCk+G +C+F H+p Zjn_sc00036.1.g02190.1.am.mkhc 237 EVCAFYMKSGTCKFGVQCRFDHPP 260 78********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.02E-5 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.638 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0013 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.7E-8 | 37 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.676 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.7E-6 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.01E-6 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-9 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-6 | 91 | 114 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-7 | 178 | 207 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.549 | 179 | 207 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-7 | 179 | 206 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-9 | 181 | 205 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-6 | 184 | 205 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.263 | 233 | 261 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.3E-6 | 233 | 260 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 237 | 260 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.8E-10 | 237 | 260 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MGRHSTVGQS EPLYSSNTMV KRPRLESNLT IYPRRPGQKA CAFYMRSRTC KYGEDCRFDH 60 PHWVPEGGIP NWREKPKSAD STALPVRPSE RVCSYYEKTG KCKFGASCRF DHPKENEMPT 120 LIGRQTIYTA TIDAEVCNVS TDGSTPEKKH TPAGPAEAHN SKGLPIRPGE PEPVTYPQRP 180 GETVCDFYMK TGTCKYTDKC KFHHPIDRSV PRPNESWDPQ QTVILTPAGL PRREDAEVCA 240 FYMKSGTCKF GVQCRFDHPP PEEAISRLKA AGGKKGAKKA AKLMAAGGKK GAK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020397512.1 | 1e-104 | uncharacterized protein LOC100216717 isoform X2 | ||||
Swissprot | Q5ZDJ6 | 4e-73 | C3H8_ORYSJ; Zinc finger CCCH domain-containing protein 8 | ||||
TrEMBL | A0A1D6NMC3 | 1e-103 | A0A1D6NMC3_MAIZE; Zinc finger CCCH domain-containing protein 37 | ||||
STRING | XP_008798450.1 | 1e-86 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5816 | 37 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 2e-61 | floral homeotic protein (HUA1) |
Publications ? help Back to Top | |||
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