PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00024.1.g02790.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GeBP

Protein Properties

Length: 522aa MW: 56552.1 Da PI: 9.7163

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00024.1.g02790.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	36.3	1.5e-11	208	295	4	97
DUF573 4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfs 81 rlws+eD i +L +l +++g p+ d + v++s++ + s s+l e++rrLK++++k v+k + s Zjn_sc00024.1.g02790.1.sm.mkhc 208 LRLWSKEDSIKILEALAAHVKSEGRLPKTD--ILLAAVRDSLDrKDCSYSDLYERVRRLKERYEKTVSK-----GVLPS 279 59***************99999776665..58999*72579********************.....34445 PP DUF573 82 kehdqkifelskkiWg 97 +e++ ++ +ls+ +Wg Zjn_sc00024.1.g02790.1.sm.mkhc 280 EEDELQMHNLSEAVWG 295 6666789999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	9.8E-16	209	295	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence Send to blast
MARKRRAPSP APPPPLPQES SSETGSDTEE EEDSPRAAAS QKQPQNPQLQ ALAAAANGAD 60 SDADTDADLQ AFQMRRVTRS PAKQGAPTPQ PGTDADEEEK DGESSESEPE VPDPVPKKAA 120 VAKKAKAVEK DKKRAAPEAA PSRKGKKVKA EPPASPTGKG KKAKAEPEKP APEATPSGKA 180 KMPGGKPEKS GLDSTPPSTK SEKSVRALRL WSKEDSIKIL EALAAHVKSE GRLPKTDILL 240 AAVRDSLDRK DCSYSDLYER VRRLKERYEK TVSKGVLPSE EDELQMHNLS EAVWGEKAKE 300 AIAAAAASQN GSTVTDSKKG QANKEKMDGN SRGDTSKEVV NQNGGTRKGV KKGQAINENH 360 DMDVKRKIFK EDSATGTSNK TKKLGNEKEE LGKSVKNGTS NETPTKNGDT LTKRKRGKMV 420 PKEASTDRQN VGSQAEDATH PEEEEIGAAI QGMRRSFDEL QNLYPSLAWS VERMAVQHPC 480 GETLKRAFEF IHDDKANALE SKFKKQRISD VKMPGWKPQS SC

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence Send to blast

MARKRRAPSP APPPPLPQES SSETGSDTEE EEDSPRAAAS QKQPQNPQLQ ALAAAANGAD  60
SDADTDADLQ AFQMRRVTRS PAKQGAPTPQ PGTDADEEEK DGESSESEPE VPDPVPKKAA  120
VAKKAKAVEK DKKRAAPEAA PSRKGKKVKA EPPASPTGKG KKAKAEPEKP APEATPSGKA  180
KMPGGKPEKS GLDSTPPSTK SEKSVRALRL WSKEDSIKIL EALAAHVKSE GRLPKTDILL  240
AAVRDSLDRK DCSYSDLYER VRRLKERYEK TVSKGVLPSE EDELQMHNLS EAVWGEKAKE  300
AIAAAAASQN GSTVTDSKKG QANKEKMDGN SRGDTSKEVV NQNGGTRKGV KKGQAINENH  360
DMDVKRKIFK EDSATGTSNK TKKLGNEKEE LGKSVKNGTS NETPTKNGDT LTKRKRGKMV  420
PKEASTDRQN VGSQAEDATH PEEEEIGAAI QGMRRSFDEL QNLYPSLAWS VERMAVQHPC  480
GETLKRAFEF IHDDKANALE SKFKKQRISD VKMPGWKPQS SC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824313.1	1e-125	recombination repair protein 1-like
TrEMBL	A0A3L6QKN4	1e-131	A0A3L6QKN4_PANMI; Hepatoma-derived growth factor-related protein 2-like
STRING	Pavir.Ab01142.1.p	1e-122	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37