PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00023.1.g03960.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 409aa MW: 43094.4 Da PI: 7.5729

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00023.1.g03960.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00027	304	337	16	54
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + ++ L++l+ + +K + a++L +++eYIk L Zjn_sc00023.1.g03960.1.am.mkhc 304 LGDRVTALQQLVAPF-----GKTDTASVLHETIEYIKFL 337 555666677777776.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.363	288	337	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.77E-4	298	341	No hit	No description
SuperFamily	SSF47459	5.5E-10	298	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-7	298	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MGDHAEMLHA APAMYYAAGG AAPHGGWWNT AATCSTELAG VSTWSSALAG SYDIAAEGAK 60 AKSATTASSV SPGNNSSVTF QEPTTGVADA AGVAVQQPLA SFTDWSHLVN GSGVTLHGFL 120 QDGQQHDMSS RTDQLNHINA PSLMNPSSNN LTLQGHHEQG HGHQQPMSNF NLGSELLLSP 180 TSPYGIQSSL LRSLVEPMAA TVAKPALPAG FQQYDQYGHQ MGMGQAPAAG RFALPLQFTN 240 EAAAFWNPSA GFGALAPEPN QASLGAAKPS PVTNKKTNGQ PAFKKPRLET PSPLPTFKVR 300 KEKLGDRVTA LQQLVAPFGK TDTASVLHET IEYIKFLHDQ VGALSAPYLK KKGHQVPHLK 360 SSSPDKSKDG HGEILLKGRG LCLVPISSTF AVASEVPVDF WTPFGANFR

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MGDHAEMLHA APAMYYAAGG AAPHGGWWNT AATCSTELAG VSTWSSALAG SYDIAAEGAK  60
AKSATTASSV SPGNNSSVTF QEPTTGVADA AGVAVQQPLA SFTDWSHLVN GSGVTLHGFL  120
QDGQQHDMSS RTDQLNHINA PSLMNPSSNN LTLQGHHEQG HGHQQPMSNF NLGSELLLSP  180
TSPYGIQSSL LRSLVEPMAA TVAKPALPAG FQQYDQYGHQ MGMGQAPAAG RFALPLQFTN  240
EAAAFWNPSA GFGALAPEPN QASLGAAKPS PVTNKKTNGQ PAFKKPRLET PSPLPTFKVR  300
KEKLGDRVTA LQQLVAPFGK TDTASVLHET IEYIKFLHDQ VGALSAPYLK KKGHQVPHLK  360
SSSPDKSKDG HGEILLKGRG LCLVPISSTF AVASEVPVDF WTPFGANFR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK069366	1e-116	AK069366.1 Oryza sativa Japonica Group cDNA clone:J023012B21, full insert sequence.
GenBank	CT832701	1e-116	CT832701.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224H06, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822972.1	0.0	transcription factor bHLH112-like
TrEMBL	A0A1E5VU63	0.0	A0A1E5VU63_9POAL; Transcription factor bHLH112
STRING	Si010139m	1e-178	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2216	37	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.3	6e-49	bHLH family protein