PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00023.1.g00460.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 507aa MW: 54004.3 Da PI: 6.8127

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00023.1.g00460.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.8	2.8e-21	116	171	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le+lF++ ++p++++r+eL+k+lgL+ rq+k+WFqNrR+++k Zjn_sc00023.1.g00460.1.sm.mk 116 KKRYHRHTPHQIQQLEALFKQYPHPDEKQRAELSKRLGLEPRQIKFWFQNRRTQMK 171 678899***********************************************999 PP
2	START	79.2	9.7e-26	257	329	133	206
TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 133 eqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +q+ + s+v +++ pSg+++++++ng +kvtwveh++++++++h+l+r+l++sgla+ga +w+atlqrqce+ Zjn_sc00023.1.g00460.1.sm.mk 257 PQMHS-LDSSVNCRRQPSGCVMQDTPNGLCKVTWVEHTEYDEASVHQLYRPLLQSGLAFGAGRWLATLQRQCEC 329 55555.6899**************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.46E-21	98	173	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.6E-24	99	167	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.269	113	173	IPR001356	Homeobox domain
SMART	SM00389	1.8E-19	114	177	IPR001356	Homeobox domain
CDD	cd00086	4.53E-20	115	173	No hit	No description
Pfam	PF00046	1.0E-18	116	171	IPR001356	Homeobox domain
PRINTS	PR00031	4.7E-5	144	153	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	148	171	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.7E-5	153	169	IPR000047	Helix-turn-helix motif
PROSITE profile	PS50848	17.473	256	332	IPR002913	START domain
Pfam	PF01852	3.2E-21	256	329	IPR002913	START domain
SuperFamily	SSF55961	1.22E-9	257	329	No hit	No description
SuperFamily	SSF55961	5.13E-6	398	500	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MSFGGLFDGC EGPGAMAGVQ YPAVSGVVAS SPALSLALAG RGRDGGIGRT GSSAGRDGGV 60 GRTDSSSAVR GGGIAATDVS EVVENDSLSA CDHADAVFSG GGSEDDADAG NPRKRKKRYH 120 RHTPHQIQQL EALFKQYPHP DEKQRAELSK RLGLEPRQIK FWFQNRRTQM KTQLERHENA 180 LLKQENDKLR AENQSVREAL TNLVCGNCGG PAMLGEVSLE EHHLRLENAR LRDELTHVCA 240 LAAKFIDKPI SPMAAPPQMH SLDSSVNCRR QPSGCVMQDT PNGLCKVTWV EHTEYDEASV 300 HQLYRPLLQS GLAFGAGRWL ATLQRQCECL AILMSSIAMP ERDSAGVRAS SAREWSKLDC 360 LTGSIGADVR VMVRKSVDEP GVPPGVVLSA ATSPTSPNQN SMLILQETCT DESGAMVVYA 420 PVDIPAMQLV MGGGDSTCVA LLPSGFAILP GGPCISAKTN GSLLTVAFQI LVNSQPTAKL 480 TAESVDTVNN LIACTIKKIK AALHCDV

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MSFGGLFDGC EGPGAMAGVQ YPAVSGVVAS SPALSLALAG RGRDGGIGRT GSSAGRDGGV  60
GRTDSSSAVR GGGIAATDVS EVVENDSLSA CDHADAVFSG GGSEDDADAG NPRKRKKRYH  120
RHTPHQIQQL EALFKQYPHP DEKQRAELSK RLGLEPRQIK FWFQNRRTQM KTQLERHENA  180
LLKQENDKLR AENQSVREAL TNLVCGNCGG PAMLGEVSLE EHHLRLENAR LRDELTHVCA  240
LAAKFIDKPI SPMAAPPQMH SLDSSVNCRR QPSGCVMQDT PNGLCKVTWV EHTEYDEASV  300
HQLYRPLLQS GLAFGAGRWL ATLQRQCECL AILMSSIAMP ERDSAGVRAS SAREWSKLDC  360
LTGSIGADVR VMVRKSVDEP GVPPGVVLSA ATSPTSPNQN SMLILQETCT DESGAMVVYA  420
PVDIPAMQLV MGGGDSTCVA LLPSGFAILP GGPCISAKTN GSLLTVAFQI LVNSQPTAKL  480
TAESVDTVNN LIACTIKKIK AALHCDV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	117	PRKRKKR
2	112	116	RKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006652658.1	1e-119	PREDICTED: homeobox-leucine zipper protein ROC4
Swissprot	Q6EPF0	1e-118	ROC5_ORYSJ; Homeobox-leucine zipper protein ROC5
TrEMBL	A0A3L6QXY5	0.0	A0A3L6QXY5_PANMI; Uncharacterized protein
STRING	OMERI04G17870.2	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP21042	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	5e-94	homeodomain GLABROUS 1

Publications ? help Back to Top
Zou LP, et al. Leaf rolling controlled by the homeodomain leucine zipper class IV gene Roc5 in rice. Plant Physiol., 2011. 156(3): p. 1589-602 [PMID:21596949] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]