PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00022.1.g05620.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 422aa    MW: 45151.3 Da    PI: 9.1336
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00022.1.g05620.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.1e-16270317355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+G+r ++ +g+Wv+eIr+p+    + +r++lg++ tae+Aa+a++ a+++l+g
  Zjn_sc00022.1.g05620.1.am.mk 270 YRGIR-CR-SGKWVSEIREPR----KaRRIWLGTYPTAEMAAAAYDVAARALRG 317
                                   9***9.55.6*********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.7E-21269330IPR001471AP2/ERF domain
PROSITE profilePS5103218.307269331IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-14269320IPR016177DNA-binding domain
CDDcd000182.18E-12270320No hitNo description
Gene3DG3DSA:3.30.730.107.8E-22270320IPR001471AP2/ERF domain
PfamPF008479.4E-9270317IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MPRADRGNLW ERSRDTGLPA ESRVRPANRD SRKVADRGRH GSGSRAAPLQ GHWTLVRPLD  60
RGRFFVPKQT DSDRSLQGTG RSVVVHARVS VVVVCAADIP ERIPCPTTAR LRPSCDHDNL  120
RRSRQMASEK KKDESPGPRL EATRQPQSDA FPASLSLTAT APLPSCSPED KTKGGKGNQL  180
SASHPPAQIT RLPPQRAVSL HCQRPQQQQS PASSPPDTKP QAPGPGPSSP CSTTPPVAQG  240
DATTGVSTAP AAATSSGEPS PRSSGKHAFY RGIRCRSGKW VSEIREPRKA RRIWLGTYPT  300
AEMAAAAYDV AARALRGTDA LEHPHGGVDA PDAAAPALAP DQGPQQQHGM SSAAAGASSC  360
APQQEFGNEE FMDEEAIFEM PQLLRNMAAG MMMSPPRLSP YTSDESPDPS EAGESLWSYR  420
DP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1693722e-85AC169372.2 Sorghum bicolor clone SB_BBc0156J18, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-27ERF family protein